- See Also
-
Links
- “Actionable Genotypes and Their Association With Life Span in Iceland”, Jensson et al 2023
- “The Landscape of Ancient Human Pathogens in Eurasia from the Stone Age to Historical Times”, Sikora et al 2023
- “Unambiguous Discrimination of All 20 Proteinogenic Amino Acids and Their Modifications by Nanopore”, Wang et al 2023d
- “The Complete Sequence of a Human Y Chromosome”, Rhie et al 2023
- “A 2-million-year-old Microbial and Viral Communities from the Kap København Formation in North Greenland”, Fernandez-Guerra et al 2023
- “Comparative Genomics of Balto, a Famous Historic Dog, Captures Lost Diversity of 1920s Sled Dogs”, Moon et al 2023
- “Hospital’s Water Purification System Stripped out Chlorine, Killing 3 Patients: It Was Supposed to Improve Taste, but Instead Led to Deadly Infections”, Mole 2023
- “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-biomass Microbial Studies”, Kennedy et al 2023
- “A Harmonized Public Resource of Deeply Sequenced Diverse Human Genomes”, Koenig et al 2023
- “Evolutionary Constraint and Innovation across Hundreds of Placental Mammals”, Christmas et al 2023
- “Why Scientists Dug up the Father of Genetics, Gregor Mendel, and Analyzed His DNA”, Greenfieldboyce 2022
- “Retrieving the Near-complete Genome of a Threatened Bird from Wild Frozen Samples”, Luo et al 2022
- “Pathogen Genomics Study of an Early Medieval Community in Germany Reveals Extensive Co-infections”, Bonczarowska et al 2022
- “Oldest Known DNA Paints Picture of a Once-Lush Arctic: In Greenland’s Permafrost, Scientists Discovered Two-million-year-old Genetic Material from Scores of Plant and Animal Species, including Mastodons, Geese, Lemmings and Ants”, Zimmer 2022
- “A 2-million-year-old Ecosystem in Greenland Uncovered by Environmental DNA”, Kjær et al 2022
- “Distilled DeepConsensus: Knowledge Distillation for Fast and Accurate DNA Sequence Correction”, Belyaeva et al 2022
- “KIN: A Method to Infer Relatedness from Low-coverage Ancient DNA”, Popli et al 2022
- “Genetic Insights into the Social Organization of Neanderthals”, Skov et al 2022
- “Data Descriptor: Human Whole Exome Genotype Data for Alzheimer’s Disease”, Leung et al 2022
- “Ancient Marine Sediment DNA Reveals Diatom Transition in Antarctica”, Armbrecht et al 2022
- “Illumina Aims to Push Genetics Beyond the Lab With $200 Genome”, Peebles 2022
- “Genomic Prediction With Whole-genome Sequence Data in Intensely-selected Pig Lines”, Ros-Freixedes et al 2022
- “Haplotype-resolved Assemblies and Variant Benchmark of a Chinese Quartet”, Jia et al 2022
- “Developmental Implications of Genetic Testing for Physical Indications”, Baribeau et al 2022
- “Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care”, Wei et al 2022
- “23andMe Pins Future on 'Genomic Health Service', Therapeutic Development”, Versel 2022
- “Scalable, High Quality, Whole Genome Sequencing from Archived, Newborn, Dried Blood Spots”, Ding et al 2022
- “Somerton Man Mystery 'solved' As DNA Points to Man's Identity, Professor Claims”, Whiteman 2022
- “Imputation of Ancient Genomes”, Mota et al 2022
- “Health Care Utilization of Fine-scale Identity by Descent Clusters in a Los Angeles Biobank”, Caggiano et al 2022
- “German Fighter Pilot Identified After 79 Years from DNA on Envelope”, DutchNews.nl 2022
- “Realizing the Promise of Biodiversity Genomics With Highly Accurate Long Reads”, Hotaling et al 2022
- “A Draft Human Pangenome Reference”, Liao et al 2022
- “Pleistocene Glacial and Interglacial Ecosystems Inferred from Ancient DNA Analyses of Permafrost Sediments from Batagay Megaslump, East Siberia”, Courtin et al 2022
- “Cost-efficient Whole Genome-sequencing Using Novel Mostly Natural Sequencing-by-synthesis Chemistry and Open Fluidics Platform”, Almogy et al 2022
- “Parent-of-origin Detection and Chromosome-scale Haplotyping Using Long-read DNA Methylation Sequencing and Strand-seq”, Akbari et al 2022
- “DNA Methylation Clocks for Dogs and Humans”, Horvath et al 2022
- “Genomic Selection in Aquaculture Species”, Allal & Nguyen 2022
- “Large-scale Fungal Strain Sequencing Unravels the Molecular Diversity in Mating Loci Maintained by Long-term Balancing Selection”, Peris et al 2022
- “Measuring Biodiversity from DNA in the Air”, Clare et al 2022
- “Environmental Paleomicrobiology: Using DNA Preserved in Aquatic Sediments to Its Full Potential”, Capo et al 2022
- “Ultra-Rapid Nanopore Genome Sequencing in a Critical Care Setting”, Gorzynski et al 2022
- “Microstratigraphic Preservation of Ancient Faunal and Hominin DNA in Pleistocene Cave Sediments”, Massilani et al 2021
- “The Sequences of 150,119 Genomes in the UK Biobank”, Halldorsson et al 2021
- “100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care—Preliminary Report”, Investigators 2021
- “Returning Actionable Genomic Results in a Research Biobank: Analytic Validity, Clinical Implementation, and Resource Usage”, Zawatsky et al 2021
- “Molecular Recording of Sequential Cellular Events into DNA”, Loveless et al 2021
- “Parent-of-origin Effects in the UK Biobank”, Hofmeister et al 2021
- “Predicting Skeletal Stature Using Ancient DNA”, Cox et al 2021
- “Ultra-cheap and Scalable Epigenetic Age Predictions With TIME-Seq”, Griffin et al 2021
- “Recording of Cellular Physiological Histories along Optically Readable Self-assembling Protein Chains”, Linghu et al 2021
- “DeepConsensus: Gap-Aware Sequence Transformers for Sequence Correction”, Baid et al 2021
- “Using Historical Museum Samples to Examine Divergent and Parallel Evolution in the Invasive Starling”, Stuart et al 2021
- “A Global Nucleic Acid Observatory for Biodefense and Planetary Health”, Consortium 2021
- “Infinite Re-reading of Single Proteins at Single-amino-acid Resolution Using Nanopore Sequencing”, Brinkerhoff et al 2021
- “A Complete Reference Genome Improves Analysis of Human Genetic Variation”, Aganezov et al 2021
- “Borgs Are Giant Extrachromosomal Elements With the Potential to Augment Methane Oxidation”, Al-Shayeb et al 2021
- “A Complete Human Genome Sequence Is Close: How Scientists Filled in the Gaps. Researchers Added 200 Million DNA Base Pairs and 115 Protein-coding Genes—but They’ve yet to Entirely Sequence the Y Chromosome”, Reardon 2021
- “Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome”, Owen et al 2021
- “The Complete Sequence of a Human Genome”, Nurk et al 2021
- “Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-term Effect of Yersinia Pestis on Human Immunity Genes”, Immel et al 2021
- “High-throughput Functional Variant Screens via in Vivo Production of Single-stranded DNA”, Schubert et al 2021
- “Multi-tissue Integrative Analysis of Personal Epigenomes”, Rozowsky et al 2021
- “Unearthing Neanderthal Population History Using Nuclear and Mitochondrial DNA from Cave Sediments”, Vernot et al 2021
- “Sedimentary Ancient DNA As a Tool in Paleoecology”, Crump 2021
- “Million-Year-Old DNA Rewrites the Mammoth Family Tree: Genomic Data—the Oldest Ever Recovered from a Fossil—reveals the Origin and Evolution of the Columbian Mammoth”, Kornei 2021
- “Million-year-old DNA Sheds Light on the Genomic History of Mammoths”, Valk et al 2021
- “Universal DNA Methylation Age across Mammalian Tissues”, Consortium et al 2021
- “Genome-scale Sequencing and Analysis of Human, Wolf and Bison DNA from 25,000 Year-old Sediment”, Gelabert et al 2021
- “Identifying a Living Great-grandson of the Lakota Sioux Leader Tatanka Iyotake (Sitting Bull)”, Moltke 2021
- “Hybridisation Capture Allows DNA Damage Analysis of Ancient Marine Eukaryotes”, Armbrecht et al 2021
- “Biological Structure and Function Emerge from Scaling Unsupervised Learning to 250 Million Protein Sequences”, Rives et al 2020
- “Long Read Sequencing of 3,622 Icelanders Provides Insight into the Role of Structural Variants in Human Diseases and Other Traits”, Beyter et al 2020
- “A New and Improved Genome Sequence of Cannabis Sativa”, Braich et al 2020
- “High-throughput, Low-cost and Rapid DNA Sequencing Using Surface-coating Techniques”, Qin et al 2020
- “Rare Genetic Variation Underlying Human Diseases and Traits: Results from 200,000 Individuals in the UK Biobank”, Jurgens et al 2020
- “An Integrative Analysis of Genomic and Exposomic Data for Complex Traits and Phenotypic Prediction”, Zhou & Lee 2020
- “Exome Sequencing and Characterization of 49,960 Individuals in the UK Biobank”, Hout et al 2020
- “Changes in the Composition of Marine and Sea-ice Diatoms Derived from Sedimentary Ancient DNA of the Eastern Fram Strait over the past 30 000 Years”, Zimmermann et al 2020
- “Whole-exome Imputation within UK Biobank Powers Rare Coding Variant Association and Fine-mapping Analyses”, Barton et al 2020
- “Exome-wide Association Studies in General and Long-lived Populations Identify Genetic Variants Related to Human Age”, Sin-Chan et al 2020
- “Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor”, Vuillemin et al 2020
- “Identifying Regulatory Elements via Deep Learning”, Barshai et al 2020
- “Genetic Ancestry Analysis on >93,000 Individuals Undergoing Expanded Carrier Screening Reveals Limitations of Ethnicity-based Medical Guidelines”, Kaseniit et al 2020
- “Genomic Analyses Implicate Noncoding de Novo Variants in Congenital Heart Disease”, Richter et al 2020
- “China Is Collecting DNA From Tens of Millions of Men and Boys, Using U.S. Equipment: Even Children Are Pressed into Giving Blood Samples to Build a Sweeping Genetic Database That Will Add to Beijing’s Growing Surveillance Capabilities, Raising Questions about Abuse and Privacy.”, Wee 2020
- “The Maturing Relationship between Quaternary Paleoecology and Ancient Sedimentary DNA”, Edwards 2020
- “An Integrated Polygenic and Clinical Risk Tool Enhances Coronary Artery Disease Prediction”, Aguilera et al 2020
- “The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems”, Armbrecht 2020
- “Efficient Phasing and Imputation of Low-coverage Sequencing Data Using Large Reference Panels”, Rubinacci et al 2020
- “An Optimized Method for the Extraction of Ancient Eukaryote DNA from Marine Sediments”, Armbrecht et al 2020b
- “Urine As a High-quality Source of Host Genomic DNA from Wild Populations”, Ozga et al 2020
- “Whole-genome Sequencing of Rare Disease Patients in a National Healthcare System”, Ouwehand et al 2020
- “Sequence and Annotation of 42 Cannabis Genomes Reveals Extensive Copy Number Variation in Cannabinoid Synthesis and Pathogen Resistance Genes”, McKernan et al 2020
- “Planktonic Foraminifera Genomic Variations Reflect Paleoceanographic Changes in the Arctic: Evidence from Sedimentary Ancient DNA”, Pawłowska et al 2020
- “A 5700 Year-old Human Genome and Oral Microbiome from Chewed Birch Pitch”, Jensen et al 2019
- “Metagenomic Analysis of a Blood Stain from the French Revolutionary Jean-Paul Marat (1743-1793)”, de-Dios et al 2019
- “UK Biobank Leads the Way in Genetics Research to Tackle Chronic Diseases”, Biobank 2019
- “Genomics Reveals the Origins of Ancient Specimens”, Cong et al 2019
- “Ancient DNA from Marine Sediments: Precautions and Considerations for Seafloor Coring, Sample Handling and Data Generation”, Armbrecht et al 2019
- “Activation of Toll-like Receptor 7/8 Encoded by the X Chromosome Alters Sperm Motility and Provides a Novel Simple Technology for Sexing Sperm”, Umehara et al 2019
- “New Kinship and FST Estimates Reveal Higher Levels of Differentiation in the Global Human Population”, Ochoa & Storey 2019
- “A Late Middle Pleistocene Denisovan Mandible from the Tibetan Plateau”, Chen et al 2019d
- “The Potential of Sedimentary Ancient DNA for Reconstructing past Sea Ice Evolution”, Schepper et al 2019
- “The York Gospels: a 1000-year Biological Palimpsest”, Teasdale 2019
- “Genome-wide Variants of Eurasian Facial Shape Differentiation and a Prospective Model of DNA Based Face Prediction”, Qiao et al 2018
- “Strand-seq Enables Reliable Separation of Long Reads by Chromosome via Expectation Maximization”, Ghareghani et al 2018
- “Re-identification of Genomic Data Using Long Range Familial Searches”, Erlich et al 2018
- “Genetic Tools Weed out Misconceptions of Strain Reliability in Cannabis Sativa: Implications for a Budding Industry”, Schwabe & McGlaughlin 2018
- “On the Number of Siblings and p-th Cousins in a Large Population Sample”, Shchur & Nielsen 2018
- “Crowdsourcing Big Data Research on Human History and Health: from Genealogies to Genomes and Back Again”, Keinan & Lussier 2018
- “Quantitative Analysis of Population-scale Family Trees With Millions of Relatives”, Kaplanis et al 2018
- “Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants”, Farnaes et al 2018
- “Fine-mapping of an Expanded Set of Type 2 Diabetes Loci to Single-variant Resolution Using High-density Imputation and Islet-specific Epigenome Maps”, Mahajan et al 2018
- “Genotype Imputation from Large Reference Panels”, Das et al 2018
- “An Atlas of Genetic Associations in UK Biobank”, Canela-Xandri et al 2017
- “Genome-wide Genetic Data on ~500,000 UK Biobank Participants”, Bycroft et al 2017
- “10 Years of GWAS Discovery: Biology, Function, and Translation”, Visscher et al 2017
- “DNA.Land: A Digital Biobank Using a Massive Crowdsourcing Approach”, Yuan et al 2017
- “Genome Graphs and the Evolution of Genome Inference”, Paten et al 2017
- “Comparison of Methods That Use Whole Genome Data to Estimate the Heritability and Genetic Architecture of Complex Traits”, Evans et al 2017
- “Excess of Genomic Defects in a Woolly Mammoth on Wrangel Island”, Rogers & Slatkin 2017
- “Racial Minority Group Interest in Direct-to-consumer Genetic Testing: Findings from the PGen Study”, Landry et al 2017
- “Capacity-approaching DNA Storage”, Erlich & Zielinski 2016
- “Clinical Utility of Expanded Carrier Screening: Reproductive Behaviors of At-Risk Couples”, Ghiossi et al 2016
- “Ancient Mitochondrial DNA Provides High-resolution Time Scale of the Peopling of the Americas”, Llama 2016
- “Genetic Variance Estimation With Imputed Variants Finds Negligible Missing Heritability for Human Height and Body Mass Index”, Yang et al 2015
- “Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth”, Palkopoulou et al 2015
- “Resolving the Complexity of the Human Genome Using Single-molecule Sequencing”, Chaisson et al 2015
- “Clinical Outcome of Preimplantation Genetic Diagnosis and Screening Using next Generation Sequencing”, Tan et al 2014
- “Genome Sequence of a 45,000-year-old Modern Human from Western Siberia”, Fu et al 2014
- “Actionable Diagnosis of Neuroleptospirosis by Next-generation Sequencing”, Wilson et al 2014
- “Recalibrating Equus Evolution Using the Genome Sequence of an Early Middle Pleistocene Horse”, Orlando et al 2013
- “A High Coverage of the Denisovan Hominin”, Meyer 2012
- “The Draft Genome and Transcriptome of Cannabis Sativa”, Bakel et al 2011
- “Variation in Actual Relationship As a Consequence of Mendelian Sampling and Linkage”, Hill & Weir 2011
- “Ancestry Informative Marker Sets for Determining Continental Origin and Admixture Proportions in Common Populations in America”, Kosoy et al 2009
- “Demographic History of European Populations of Arabidopsis Thaliana”, François et al 2008
- “Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland”, Willerslev 2007
- “Sequencing and Analysis of Neanderthal Genomic DNA”, Noonan et al 2006
- “Metagenomics to Paleogenomics: Large-scale Sequencing of Mammoth DNA”, Poinar 2006
- “Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments”, Willerslev 2003
- “Approximate Bayesian Computation in Population Genetics”, Beaumont et al 2002
- “Revival and Identification of Bacterial Spores in 25 to 40-Million-Year-Old Dominican Amber”, Cano & Borucki 1995
- “The Effects of DNA Databases on the Deterrence and Detection of Offenders”
- Sort By Magic
- Wikipedia
- Miscellaneous
- Link Bibliography
See Also
Links
“Actionable Genotypes and Their Association With Life Span in Iceland”, Jensson et al 2023
“Actionable Genotypes and Their Association with Life Span in Iceland”
“The Landscape of Ancient Human Pathogens in Eurasia from the Stone Age to Historical Times”, Sikora et al 2023
“The landscape of ancient human pathogens in Eurasia from the Stone Age to historical times”
“Unambiguous Discrimination of All 20 Proteinogenic Amino Acids and Their Modifications by Nanopore”, Wang et al 2023d
“Unambiguous discrimination of all 20 proteinogenic amino acids and their modifications by nanopore”
“The Complete Sequence of a Human Y Chromosome”, Rhie et al 2023
“A 2-million-year-old Microbial and Viral Communities from the Kap København Formation in North Greenland”, Fernandez-Guerra et al 2023
“Comparative Genomics of Balto, a Famous Historic Dog, Captures Lost Diversity of 1920s Sled Dogs”, Moon et al 2023
“Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs”
“Hospital’s Water Purification System Stripped out Chlorine, Killing 3 Patients: It Was Supposed to Improve Taste, but Instead Led to Deadly Infections”, Mole 2023
“Questioning the Fetal Microbiome Illustrates Pitfalls of Low-biomass Microbial Studies”, Kennedy et al 2023
“Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies”
“A Harmonized Public Resource of Deeply Sequenced Diverse Human Genomes”, Koenig et al 2023
“A harmonized public resource of deeply sequenced diverse human genomes”
“Evolutionary Constraint and Innovation across Hundreds of Placental Mammals”, Christmas et al 2023
“Evolutionary constraint and innovation across hundreds of placental mammals”
“Why Scientists Dug up the Father of Genetics, Gregor Mendel, and Analyzed His DNA”, Greenfieldboyce 2022
“Why scientists dug up the father of genetics, Gregor Mendel, and analyzed his DNA”
“Retrieving the Near-complete Genome of a Threatened Bird from Wild Frozen Samples”, Luo et al 2022
“Retrieving the near-complete genome of a threatened bird from wild frozen samples”
“Pathogen Genomics Study of an Early Medieval Community in Germany Reveals Extensive Co-infections”, Bonczarowska et al 2022
“Pathogen genomics study of an early medieval community in Germany reveals extensive co-infections”
“Oldest Known DNA Paints Picture of a Once-Lush Arctic: In Greenland’s Permafrost, Scientists Discovered Two-million-year-old Genetic Material from Scores of Plant and Animal Species, including Mastodons, Geese, Lemmings and Ants”, Zimmer 2022
“A 2-million-year-old Ecosystem in Greenland Uncovered by Environmental DNA”, Kjær et al 2022
“A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA”
“Distilled DeepConsensus: Knowledge Distillation for Fast and Accurate DNA Sequence Correction”, Belyaeva et al 2022
“Distilled DeepConsensus: Knowledge distillation for fast and accurate DNA sequence correction”
“KIN: A Method to Infer Relatedness from Low-coverage Ancient DNA”, Popli et al 2022
“KIN: A method to infer relatedness from low-coverage ancient DNA”
“Genetic Insights into the Social Organization of Neanderthals”, Skov et al 2022
“Genetic insights into the social organization of Neanderthals”
“Data Descriptor: Human Whole Exome Genotype Data for Alzheimer’s Disease”, Leung et al 2022
“Data Descriptor: Human whole exome genotype data for Alzheimer’s Disease”
“Ancient Marine Sediment DNA Reveals Diatom Transition in Antarctica”, Armbrecht et al 2022
“Ancient marine sediment DNA reveals diatom transition in Antarctica”
“Illumina Aims to Push Genetics Beyond the Lab With $200 Genome”, Peebles 2022
“Illumina Aims to Push Genetics Beyond the Lab With $200 Genome”
“Genomic Prediction With Whole-genome Sequence Data in Intensely-selected Pig Lines”, Ros-Freixedes et al 2022
“Genomic prediction with whole-genome sequence data in intensely-selected pig lines”
“Haplotype-resolved Assemblies and Variant Benchmark of a Chinese Quartet”, Jia et al 2022
“Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet”
“Developmental Implications of Genetic Testing for Physical Indications”, Baribeau et al 2022
“Developmental implications of genetic testing for physical indications”
“Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care”, Wei et al 2022
“Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care”
“23andMe Pins Future on 'Genomic Health Service', Therapeutic Development”, Versel 2022
“23andMe Pins Future on 'Genomic Health Service', Therapeutic Development”
“Scalable, High Quality, Whole Genome Sequencing from Archived, Newborn, Dried Blood Spots”, Ding et al 2022
“Scalable, high quality, whole genome sequencing from archived, newborn, dried blood spots”
“Somerton Man Mystery 'solved' As DNA Points to Man's Identity, Professor Claims”, Whiteman 2022
“Somerton man mystery 'solved' as DNA points to man's identity, professor claims”
“Imputation of Ancient Genomes”, Mota et al 2022
“Health Care Utilization of Fine-scale Identity by Descent Clusters in a Los Angeles Biobank”, Caggiano et al 2022
“Health care utilization of fine-scale identity by descent clusters in a Los Angeles biobank”
“German Fighter Pilot Identified After 79 Years from DNA on Envelope”, DutchNews.nl 2022
“German fighter pilot identified after 79 years from DNA on envelope”
“Realizing the Promise of Biodiversity Genomics With Highly Accurate Long Reads”, Hotaling et al 2022
“Realizing the promise of biodiversity genomics with highly accurate long reads”
“A Draft Human Pangenome Reference”, Liao et al 2022
“Pleistocene Glacial and Interglacial Ecosystems Inferred from Ancient DNA Analyses of Permafrost Sediments from Batagay Megaslump, East Siberia”, Courtin et al 2022
“Cost-efficient Whole Genome-sequencing Using Novel Mostly Natural Sequencing-by-synthesis Chemistry and Open Fluidics Platform”, Almogy et al 2022
“Parent-of-origin Detection and Chromosome-scale Haplotyping Using Long-read DNA Methylation Sequencing and Strand-seq”, Akbari et al 2022
“DNA Methylation Clocks for Dogs and Humans”, Horvath et al 2022
“Genomic Selection in Aquaculture Species”, Allal & Nguyen 2022
“Large-scale Fungal Strain Sequencing Unravels the Molecular Diversity in Mating Loci Maintained by Long-term Balancing Selection”, Peris et al 2022
“Measuring Biodiversity from DNA in the Air”, Clare et al 2022
“Environmental Paleomicrobiology: Using DNA Preserved in Aquatic Sediments to Its Full Potential”, Capo et al 2022
“Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential”
“Ultra-Rapid Nanopore Genome Sequencing in a Critical Care Setting”, Gorzynski et al 2022
“Ultra-Rapid Nanopore Genome Sequencing in a Critical Care Setting”
“Microstratigraphic Preservation of Ancient Faunal and Hominin DNA in Pleistocene Cave Sediments”, Massilani et al 2021
“Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments”
“The Sequences of 150,119 Genomes in the UK Biobank”, Halldorsson et al 2021
“100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care—Preliminary Report”, Investigators 2021
“100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care—Preliminary Report”
“Returning Actionable Genomic Results in a Research Biobank: Analytic Validity, Clinical Implementation, and Resource Usage”, Zawatsky et al 2021
“Molecular Recording of Sequential Cellular Events into DNA”, Loveless et al 2021
“Molecular recording of sequential cellular events into DNA”
“Parent-of-origin Effects in the UK Biobank”, Hofmeister et al 2021
“Predicting Skeletal Stature Using Ancient DNA”, Cox et al 2021
“Ultra-cheap and Scalable Epigenetic Age Predictions With TIME-Seq”, Griffin et al 2021
“Ultra-cheap and scalable epigenetic age predictions with TIME-Seq”
“Recording of Cellular Physiological Histories along Optically Readable Self-assembling Protein Chains”, Linghu et al 2021
“DeepConsensus: Gap-Aware Sequence Transformers for Sequence Correction”, Baid et al 2021
“DeepConsensus: Gap-Aware Sequence Transformers for Sequence Correction”
“Using Historical Museum Samples to Examine Divergent and Parallel Evolution in the Invasive Starling”, Stuart et al 2021
“A Global Nucleic Acid Observatory for Biodefense and Planetary Health”, Consortium 2021
“A Global Nucleic Acid Observatory for Biodefense and Planetary Health”
“Infinite Re-reading of Single Proteins at Single-amino-acid Resolution Using Nanopore Sequencing”, Brinkerhoff et al 2021
“Infinite re-reading of single proteins at single-amino-acid resolution using nanopore sequencing”
“A Complete Reference Genome Improves Analysis of Human Genetic Variation”, Aganezov et al 2021
“A complete reference genome improves analysis of human genetic variation”
“Borgs Are Giant Extrachromosomal Elements With the Potential to Augment Methane Oxidation”, Al-Shayeb et al 2021
“Borgs are giant extrachromosomal elements with the potential to augment methane oxidation”
“A Complete Human Genome Sequence Is Close: How Scientists Filled in the Gaps. Researchers Added 200 Million DNA Base Pairs and 115 Protein-coding Genes—but They’ve yet to Entirely Sequence the Y Chromosome”, Reardon 2021
“Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome”, Owen et al 2021
“Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome”
“The Complete Sequence of a Human Genome”, Nurk et al 2021
“Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-term Effect of Yersinia Pestis on Human Immunity Genes”, Immel et al 2021
“High-throughput Functional Variant Screens via in Vivo Production of Single-stranded DNA”, Schubert et al 2021
“High-throughput functional variant screens via in vivo production of single-stranded DNA”
“Multi-tissue Integrative Analysis of Personal Epigenomes”, Rozowsky et al 2021
“Unearthing Neanderthal Population History Using Nuclear and Mitochondrial DNA from Cave Sediments”, Vernot et al 2021
“Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments”
“Sedimentary Ancient DNA As a Tool in Paleoecology”, Crump 2021
“Million-Year-Old DNA Rewrites the Mammoth Family Tree: Genomic Data—the Oldest Ever Recovered from a Fossil—reveals the Origin and Evolution of the Columbian Mammoth”, Kornei 2021
“Million-year-old DNA Sheds Light on the Genomic History of Mammoths”, Valk et al 2021
“Million-year-old DNA sheds light on the genomic history of mammoths”
“Universal DNA Methylation Age across Mammalian Tissues”, Consortium et al 2021
“Genome-scale Sequencing and Analysis of Human, Wolf and Bison DNA from 25,000 Year-old Sediment”, Gelabert et al 2021
“Genome-scale sequencing and analysis of human, wolf and bison DNA from 25,000 year-old sediment”
“Identifying a Living Great-grandson of the Lakota Sioux Leader Tatanka Iyotake (Sitting Bull)”, Moltke 2021
“Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)”
“Hybridisation Capture Allows DNA Damage Analysis of Ancient Marine Eukaryotes”, Armbrecht et al 2021
“Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes”
“Biological Structure and Function Emerge from Scaling Unsupervised Learning to 250 Million Protein Sequences”, Rives et al 2020
“Long Read Sequencing of 3,622 Icelanders Provides Insight into the Role of Structural Variants in Human Diseases and Other Traits”, Beyter et al 2020
“A New and Improved Genome Sequence of Cannabis Sativa”, Braich et al 2020
“High-throughput, Low-cost and Rapid DNA Sequencing Using Surface-coating Techniques”, Qin et al 2020
“High-throughput, low-cost and rapid DNA sequencing using surface-coating techniques”
“Rare Genetic Variation Underlying Human Diseases and Traits: Results from 200,000 Individuals in the UK Biobank”, Jurgens et al 2020
“An Integrative Analysis of Genomic and Exposomic Data for Complex Traits and Phenotypic Prediction”, Zhou & Lee 2020
“An integrative analysis of genomic and exposomic data for complex traits and phenotypic prediction”
“Exome Sequencing and Characterization of 49,960 Individuals in the UK Biobank”, Hout et al 2020
“Exome sequencing and characterization of 49,960 individuals in the UK Biobank”
“Changes in the Composition of Marine and Sea-ice Diatoms Derived from Sedimentary Ancient DNA of the Eastern Fram Strait over the past 30 000 Years”, Zimmermann et al 2020
“Whole-exome Imputation within UK Biobank Powers Rare Coding Variant Association and Fine-mapping Analyses”, Barton et al 2020
“Exome-wide Association Studies in General and Long-lived Populations Identify Genetic Variants Related to Human Age”, Sin-Chan et al 2020
“Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor”, Vuillemin et al 2020
“Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor”
“Identifying Regulatory Elements via Deep Learning”, Barshai et al 2020
“Genetic Ancestry Analysis on >93,000 Individuals Undergoing Expanded Carrier Screening Reveals Limitations of Ethnicity-based Medical Guidelines”, Kaseniit et al 2020
“Genomic Analyses Implicate Noncoding de Novo Variants in Congenital Heart Disease”, Richter et al 2020
“Genomic analyses implicate noncoding de novo variants in congenital heart disease”
“China Is Collecting DNA From Tens of Millions of Men and Boys, Using U.S. Equipment: Even Children Are Pressed into Giving Blood Samples to Build a Sweeping Genetic Database That Will Add to Beijing’s Growing Surveillance Capabilities, Raising Questions about Abuse and Privacy.”, Wee 2020
“The Maturing Relationship between Quaternary Paleoecology and Ancient Sedimentary DNA”, Edwards 2020
“The maturing relationship between Quaternary paleoecology and ancient sedimentary DNA”
“An Integrated Polygenic and Clinical Risk Tool Enhances Coronary Artery Disease Prediction”, Aguilera et al 2020
“An integrated polygenic and clinical risk tool enhances coronary artery disease prediction”
“The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems”, Armbrecht 2020
“The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems”
“Efficient Phasing and Imputation of Low-coverage Sequencing Data Using Large Reference Panels”, Rubinacci et al 2020
“Efficient phasing and imputation of low-coverage sequencing data using large reference panels”
“An Optimized Method for the Extraction of Ancient Eukaryote DNA from Marine Sediments”, Armbrecht et al 2020b
“An optimized method for the extraction of ancient eukaryote DNA from marine sediments”
“Urine As a High-quality Source of Host Genomic DNA from Wild Populations”, Ozga et al 2020
“Urine as a high-quality source of host genomic DNA from wild populations”
“Whole-genome Sequencing of Rare Disease Patients in a National Healthcare System”, Ouwehand et al 2020
“Whole-genome sequencing of rare disease patients in a national healthcare system”
“Sequence and Annotation of 42 Cannabis Genomes Reveals Extensive Copy Number Variation in Cannabinoid Synthesis and Pathogen Resistance Genes”, McKernan et al 2020
“Planktonic Foraminifera Genomic Variations Reflect Paleoceanographic Changes in the Arctic: Evidence from Sedimentary Ancient DNA”, Pawłowska et al 2020
“A 5700 Year-old Human Genome and Oral Microbiome from Chewed Birch Pitch”, Jensen et al 2019
“A 5700 year-old human genome and oral microbiome from chewed birch pitch”
“Metagenomic Analysis of a Blood Stain from the French Revolutionary Jean-Paul Marat (1743-1793)”, de-Dios et al 2019
“Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793)”
“UK Biobank Leads the Way in Genetics Research to Tackle Chronic Diseases”, Biobank 2019
“UK Biobank leads the way in genetics research to tackle chronic diseases”
“Genomics Reveals the Origins of Ancient Specimens”, Cong et al 2019
“Ancient DNA from Marine Sediments: Precautions and Considerations for Seafloor Coring, Sample Handling and Data Generation”, Armbrecht et al 2019
“Activation of Toll-like Receptor 7/8 Encoded by the X Chromosome Alters Sperm Motility and Provides a Novel Simple Technology for Sexing Sperm”, Umehara et al 2019
“New Kinship and FST Estimates Reveal Higher Levels of Differentiation in the Global Human Population”, Ochoa & Storey 2019
“A Late Middle Pleistocene Denisovan Mandible from the Tibetan Plateau”, Chen et al 2019d
“A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau”
“The Potential of Sedimentary Ancient DNA for Reconstructing past Sea Ice Evolution”, Schepper et al 2019
“The potential of sedimentary ancient DNA for reconstructing past sea ice evolution”
“The York Gospels: a 1000-year Biological Palimpsest”, Teasdale 2019
“Genome-wide Variants of Eurasian Facial Shape Differentiation and a Prospective Model of DNA Based Face Prediction”, Qiao et al 2018
“Strand-seq Enables Reliable Separation of Long Reads by Chromosome via Expectation Maximization”, Ghareghani et al 2018
“Strand-seq enables reliable separation of long reads by chromosome via expectation maximization”
“Re-identification of Genomic Data Using Long Range Familial Searches”, Erlich et al 2018
“Re-identification of genomic data using long range familial searches”
“Genetic Tools Weed out Misconceptions of Strain Reliability in Cannabis Sativa: Implications for a Budding Industry”, Schwabe & McGlaughlin 2018
“On the Number of Siblings and p-th Cousins in a Large Population Sample”, Shchur & Nielsen 2018
“On the Number of Siblings and p-th Cousins in a Large Population Sample”
“Crowdsourcing Big Data Research on Human History and Health: from Genealogies to Genomes and Back Again”, Keinan & Lussier 2018
“Quantitative Analysis of Population-scale Family Trees With Millions of Relatives”, Kaplanis et al 2018
“Quantitative analysis of population-scale family trees with millions of relatives”
“Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants”, Farnaes et al 2018
“Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants”
“Fine-mapping of an Expanded Set of Type 2 Diabetes Loci to Single-variant Resolution Using High-density Imputation and Islet-specific Epigenome Maps”, Mahajan et al 2018
“Genotype Imputation from Large Reference Panels”, Das et al 2018
“An Atlas of Genetic Associations in UK Biobank”, Canela-Xandri et al 2017
“Genome-wide Genetic Data on ~500,000 UK Biobank Participants”, Bycroft et al 2017
“Genome-wide genetic data on ~500,000 UK Biobank participants”
“10 Years of GWAS Discovery: Biology, Function, and Translation”, Visscher et al 2017
“10 Years of GWAS Discovery: Biology, Function, and Translation”
“DNA.Land: A Digital Biobank Using a Massive Crowdsourcing Approach”, Yuan et al 2017
“DNA.Land: A digital biobank using a massive crowdsourcing approach”
“Genome Graphs and the Evolution of Genome Inference”, Paten et al 2017
“Comparison of Methods That Use Whole Genome Data to Estimate the Heritability and Genetic Architecture of Complex Traits”, Evans et al 2017
“Excess of Genomic Defects in a Woolly Mammoth on Wrangel Island”, Rogers & Slatkin 2017
“Excess of genomic defects in a woolly mammoth on Wrangel island”
“Racial Minority Group Interest in Direct-to-consumer Genetic Testing: Findings from the PGen Study”, Landry et al 2017
“Racial minority group interest in direct-to-consumer genetic testing: findings from the PGen study”
“Capacity-approaching DNA Storage”, Erlich & Zielinski 2016
“Clinical Utility of Expanded Carrier Screening: Reproductive Behaviors of At-Risk Couples”, Ghiossi et al 2016
“Clinical Utility of Expanded Carrier Screening: Reproductive Behaviors of At-Risk Couples”
“Ancient Mitochondrial DNA Provides High-resolution Time Scale of the Peopling of the Americas”, Llama 2016
“Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas”
“Genetic Variance Estimation With Imputed Variants Finds Negligible Missing Heritability for Human Height and Body Mass Index”, Yang et al 2015
“Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth”, Palkopoulou et al 2015
“Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth”
“Resolving the Complexity of the Human Genome Using Single-molecule Sequencing”, Chaisson et al 2015
“Resolving the complexity of the human genome using single-molecule sequencing”
“Clinical Outcome of Preimplantation Genetic Diagnosis and Screening Using next Generation Sequencing”, Tan et al 2014
“Genome Sequence of a 45,000-year-old Modern Human from Western Siberia”, Fu et al 2014
“Genome sequence of a 45,000-year-old modern human from western Siberia”
“Actionable Diagnosis of Neuroleptospirosis by Next-generation Sequencing”, Wilson et al 2014
“Actionable diagnosis of neuroleptospirosis by next-generation sequencing”
“Recalibrating Equus Evolution Using the Genome Sequence of an Early Middle Pleistocene Horse”, Orlando et al 2013
“Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse”
“A High Coverage of the Denisovan Hominin”, Meyer 2012
“The Draft Genome and Transcriptome of Cannabis Sativa”, Bakel et al 2011
“Variation in Actual Relationship As a Consequence of Mendelian Sampling and Linkage”, Hill & Weir 2011
“Variation in actual relationship as a consequence of Mendelian sampling and linkage”
“Ancestry Informative Marker Sets for Determining Continental Origin and Admixture Proportions in Common Populations in America”, Kosoy et al 2009
“Demographic History of European Populations of Arabidopsis Thaliana”, François et al 2008
“Demographic History of European Populations of Arabidopsis thaliana”
“Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland”, Willerslev 2007
“Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland”
“Sequencing and Analysis of Neanderthal Genomic DNA”, Noonan et al 2006
“Metagenomics to Paleogenomics: Large-scale Sequencing of Mammoth DNA”, Poinar 2006
“Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA”
“Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments”, Willerslev 2003
“Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments”
“Approximate Bayesian Computation in Population Genetics”, Beaumont et al 2002
“Revival and Identification of Bacterial Spores in 25 to 40-Million-Year-Old Dominican Amber”, Cano & Borucki 1995
“Revival and Identification of Bacterial Spores in 25 to 40-Million-Year-Old Dominican Amber”
“The Effects of DNA Databases on the Deterrence and Detection of Offenders”
“The effects of DNA databases on the deterrence and detection of offenders”
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Annotations sorted by machine learning into inferred 'tags'. This provides an alternative way to browse: instead of by date order, one can browse in topic order. The 'sorted' list has been automatically clustered into multiple sections & auto-labeled for easier browsing.
Beginning with the newest annotation, it uses the embedding of each annotation to attempt to create a list of nearest-neighbor annotations, creating a progression of topics. For more details, see the link.
dna-analysis
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https://reflectivedisequilibrium.blogspot.com/2020/05/what-would-civilization-immune-to.html -
https://twitter.com/AlbertVilella/status/1540240357555937280 -
https://www.frontiersin.org/articles/10.3389/fcosc.2023.1250996/full -
https://www.newyorker.com/science/elements/the-race-to-save-the-worlds-dna -
https://www.nytimes.com/2022/09/07/us/chahorski-killer-georgia-identified-dna.html -
https://www.nytimes.com/2023/11/15/health/million-veterans-database-va.html -
https://www.statnews.com/2019/11/14/france-consumer-genetic-testing-ban/
Link Bibliography
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https://www.biorxiv.org/content/10.1101/2022.12.01.518724.full: “The Complete Sequence of a Human Y Chromosome”, -
2023-kennedy.pdf: “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-biomass Microbial Studies”, -
https://www.npr.org/sections/health-shots/2022/12/30/1142202365/gregor-mendel-genetics-dna-analyzed: “Why Scientists Dug up the Father of Genetics, Gregor Mendel, and Analyzed His DNA”, Nell Greenfieldboyce -
https://www.nature.com/articles/s41586-022-05453-y: “A 2-million-year-old Ecosystem in Greenland Uncovered by Environmental DNA”, -
https://www.nature.com/articles/s41467-022-33494-4: “Ancient Marine Sediment DNA Reveals Diatom Transition in Antarctica”, -
https://gsejournal.biomedcentral.com/articles/10.1186/s12711-022-00756-0: “Genomic Prediction With Whole-genome Sequence Data in Intensely-selected Pig Lines”, -
2022-courtin.pdf: “Pleistocene Glacial and Interglacial Ecosystems Inferred from Ancient DNA Analyses of Permafrost Sediments from Batagay Megaslump, East Siberia”, -
https://www.biorxiv.org/content/10.1101/2022.05.29.493900.full: “Cost-efficient Whole Genome-sequencing Using Novel Mostly Natural Sequencing-by-synthesis Chemistry and Open Fluidics Platform”, -
https://www.pnas.org/doi/full/10.1073/pnas.2120887119: “DNA Methylation Clocks for Dogs and Humans”, -
https://www.sciencedirect.com/science/article/pii/S096098222101650X: “Measuring Biodiversity from DNA in the Air”, -
2022-gorzynski.pdf: “Ultra-Rapid Nanopore Genome Sequencing in a Critical Care Setting”, -
https://academic.oup.com/bioinformatics/article/34/13/i115/5045731: “Strand-seq Enables Reliable Separation of Long Reads by Chromosome via Expectation Maximization”, Maryam Ghareghani, David Porubskỳ, Ashley D. Sanders, Sascha Meiers, Evan E. Eichler, Jan O. Korbel, Tobias Marschall