‘microbiome’ directory
- See Also
- Links
- “Diet Outperforms Microbial Transplant to Drive Microbiome Recovery in Mice ”, Kennedy et al 2025
- “A Novel Cable Bacteria Species With a Distinct Morphology and Genomic Potential ”, Hiralal et al 2025
- “How a Biofilm’s Strange Shape Emerges From Cellular Geometry ”
- “Parachutes Made of Mucus Change How Some Scientists See the Ocean [Microbiome Harvesting?] ”
- “A Brain Microbiome in Salmonids at Homeostasis ”, Mani et al 2024
- “Cells Across the Tree of Life Exchange ‘Text Messages’ Using RNA ”
- “Direct Interaction between Marine Cyanobacteria Mediated by Nanotubes ”, Angulo-Cánovas et al 2024
- “Contribution of the Patient Microbiome to Surgical Site Infection and Antibiotic Prophylaxis Failure in Spine Surgery ”, Long et al 2024
- “Emergence of Large-Scale Mechanical Spiral Waves in Bacterial Living Matter ”, Liu et al 2024
- “Cellular Arrangement Impacts Metabolic Activity and Antibiotic Tolerance in Pseudomonas Aeruginosa Biofilms ”, Dayton et al 2024
- “Adaptive Immune Receptor Repertoire Analysis ”, Mhanna et al 2024
- “Viroid-Like Colonists of Human Microbiomes ”, Zheludev et al 2024
- “From Reinforcement Learning to Agency: Frameworks for Understanding Basal Cognition ”, Seifert et al 2024
- “Through the Looking Glass, and What Zheludev Et Al 2024 Found There ”
- “Pervasive Selective Sweeps across Human Gut Microbiomes ”, Garud & Wolff 2023
- “The Biophysical Basis of Bacterial Colony Growth ”, Pokhrel et al 2023
- “Integration of 168,000 Samples Reveals Global Patterns of the Human Gut Microbiome ”, Abdill et al 2023
- “Questioning the Foundations of the Gut Microbiota and Obesity ”, Dalby 2023
- “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies ”, Kennedy et al 2023
- “Effectiveness of Fecal Microbiota Transplantation for Weight Loss in Patients With Obesity Undergoing Bariatric Surgery: A Randomized Clinical Trial ”, Lahtinen et al 2022
- “Microbiome-Driven Breeding Strategy Potentially Improves Beef Fatty Acid Profile Benefiting Human Health and Reduces Methane Emissions ”, Martínez-Álvaro et al 2022
- “Genesis of Fecal Flotation Is Causally Linked to Gut Microbial Colonization in Mice ”, Aalam et al 2022
- “Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-Like Behaviors ”, Rivet-Noor et al 2022
- “Personalized Microbiome-Driven Effects of Non-Nutritive Sweeteners on Human Glucose Tolerance ”, Suez et al 2022
- “Widespread Horizontal Gene Transfer between Plants and Their Microbiota ”, Haimlich et al 2022
- “No Evidence for a Common Blood Microbiome Based on a Population Study of 9,770 Healthy Humans ”, Tan et al 2022
- “Transcardial Injection and Vascular Distribution of Microalgae in Xenopus Laevis As Means to Supply the Brain With Photosynthetic Oxygen ”, Özugur et al 2022
- “Comparison Of The Gut Microbiota In Different Age Groups In China ”, Yan et al 2022
- “Longevity, Cellular Senescence and the Gut Microbiome: Lessons to Be Learned from Crocodiles ”, Siddiqui et al 2021
- “Temporal Variability in Quantitative Human Gut Microbiome Profiles and Implications for Clinical Research ”, Vandeputte et al 2021
- “Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome ”, Figueroa et al 2021
- “Autism-Related Dietary Preferences Mediate Autism-Gut Microbiome Associations ”, Yap et al 2021
- “Genetic Innovations in Animal-Microbe Symbioses ”, Perreau & Moran 2021
- “Black Tea Quality Is Highly Affected during Processing by Its Leaf Surface Microbiome ”, Tong et al 2021
- “Exploring the Boundaries of Microbial Habitability in Soil ”, Dragone et al 2021
- “The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders ”, Richards et al 2021
- “Kin Selection Explains the Evolution of Cooperation in the Gut Microbiota ”, Simonet & McNally 2021
- “The Diversity and Function of Sourdough Starter Microbiomes ”, Landis et al 2021
- “Microbiome Connections With Host Metabolism and Habitual Diet from 1,098 Deeply Phenotyped Individuals ”, Asnicar et al 2021
- “Engineering Complex Communities by Directed Evolution ”, Chang et al 2021
- “Green Oxygen Power Plants in the Brain Rescue Neuronal Activity ”, Özugur et al 2021
- “The Lungfish Cocoon Is a Living Tissue With Antimicrobial Functions ”, Heimroth et al 2021
- “Faecal Microbiota Transplant from Aged Donor Mice Affects Spatial Learning and Memory via Modulating Hippocampal Synaptic Plasticity-Related and Neurotransmission-Related Proteins in Young Recipients ”, D’Amato et al 2020
- “Combined Effects of Host Genetics and Diet on Human Gut Microbiota and Incident Disease in a Single Population Cohort ”, Qin et al 2020
- “Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor ”, Vuillemin et al 2020
- “Human Postprandial Responses to Food and Potential for Precision Nutrition ”, Berry et al 2020
- “Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents ”, Walter et al 2020
- “A Look Back at 2019: Progress Towards the Treatment of Aging As a Medical Condition ”, Reason 2019
- “The Interplay between Host Genetics and the Gut Microbiome Reveals Common and Distinct Microbiome Features for Human Complex Diseases ”, Xu et al 2019
- “A 5700 Year-Old Human Genome and Oral Microbiome from Chewed Birch Pitch ”, Jensen et al 2019
- “The Urinary Tract Microbiome in Older Women Exhibits Host Genetics and Environmental Influences ”, Adebayo et al 2019
- “Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome ”, Pereira et al 2019
- “Maybe Your Zoloft Stopped Working Because A Liver Fluke Tried To Turn Your Nth-Great-Grandmother Into A Zombie ”, Alexander 2019
- “Long-Term Dietary Intervention Reveals Resilience of the Gut Microbiota despite Changes in Diet and Weight ”, Fragiadakis et al 2019
- “The Importance of the Microbiome in Bariatric Surgery: a Systematic Review ”, Luijten et al 2019
- “Social Evolution of Innate Immunity Evasion in a Virus ”, Domingo-Calap et al 2019
- “Supplementation With Akkermansia Muciniphila in Overweight and Obese Human Volunteers: a Proof-Of-Concept Exploratory Study ”, Depommier et al 2019
- “The Pros, Cons, and Many Unknowns of Probiotics ”, Suez et al 2019
- “The Neuroactive Potential of the Human Gut Microbiota in Quality of Life and Depression ”, Valles-Colomer et al 2019
- “Bacterial Variability in the Mammalian Gut Captured by a Single-Cell Synthetic Oscillator ”, Riglar et al 2019
- “Gut Microbiome Response to a Modern Paleolithic Diet in a Western Lifestyle Context ”, Barone et al 2018
- “Biological and Cultural Drivers of Oral Microbiota in Medieval and Post-Medieval London, UK ”, Farrer et al 2018
- “Anti-Aging Food That Improves Markers of Health in Senior Dogs by Modulating Gut Microbiota and Metabolite Profiles ”, Gebreselassie et al 2018
- “Dynamic Linear Models Guide Design and Analysis of Microbiota Studies within Artificial Human Guts ”, Silverman et al 2018
- “Parkinson’s Disease and Bacteriophages As Its Overlooked Contributors ”, Tetz et al 2018
- “Effects of Exclusive Breastfeeding on Infant Gut Microbiota: a Meta-Analysis across Studies and Populations ”, Ho et al 2018
- “The Drosophila Microbiome Has a Limited Influence on Sleep, Activity, and Courtship Behaviors ”, Selkrig et al 2018
- “Gut Microbiome Transition across a Lifestyle Gradient in Himalaya ”, Jha et al 2018
- “An Interventional Soylent Diet Increases the Bacteroidetes to Firmicutes Ratio in Human Gut Microbiome Communities: a Randomized Controlled Trial ”, Hsu et al 2017
- “Ice Nucleation Active Bacteria in Precipitation Are Genetically Diverse and Nucleate Ice by Employing Different Mechanisms ”, Failor et al 2017
- “Environmental Factors Dominate over Host Genetics in Shaping Human Gut Microbiota Composition ”, Rothschild et al 2017
- “Metformin Alters the Gut Microbiome of Individuals With Treatment-Naive Type 2 Diabetes, Contributing to the Therapeutic Effects of the Drug ”, Wu et al 2017
- “Commensal Bacteria and Essential Amino Acids Control Food Choice Behavior and Reproduction ”, Leitão-Gonçalves et al 2017
- “Bioaerosol Generation by Raindrops on Soil ”, Joung et al 2017
- “Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota ”, Li et al 2017
- “Transient Rapamycin Treatment Can Increase Lifespan and Healthspan in Middle-Aged Mice ”, Bitto et al 2016
- “The Intestinal Microbiome in Bariatric Surgery Patients ”, Peat et al 2015
- “Sequence-Specific Antimicrobials Using Efficiently Delivered RNA-Guided Nucleases ”, Citorik et al 2014
- “Human Genetics Shape the Gut Microbiome ”, Goodrich et al 2014
- “Is Eating Behavior Manipulated by the Gastrointestinal Microbiota? Evolutionary Pressures and Potential Mechanisms ”, Alcock et al 2014
- “Host-Microbe Interactions Have Shaped the Genetic Architecture of Inflammatory Bowel Disease ”, Jostins et al 2012
- “Transfer of Carbohydrate-Active Enzymes from Marine Bacteria to Japanese Gut Microbiota ”, Hehemann et al 2010
- “Sepsis and Septic Shock: A History ”, Funk et al 2009
- “Ice Nucleation Active Bacteria and Their Potential Role in Precipitation ”, Morris et al 2004
- “Bacteriophage Tales ”, Brenner 1997
- “Dietary Taurine Requirement of Cats Is Determined by Microbial Degradation of Taurine in the Gut ”, Morris et al 1994
- “Recent Advances in the Development of a Streptococcus Mutans Vaccine ”, Klein & Scholler 1988
- “Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin ”, Hillman et al 1987
- “Colonization of the Human Oral Cavity by a Strain of Streptococcus Mutans ”, Hillman et al 1985
- “Isolation of a Streptococcus Mutans Strain Producing a Novel Bacteriocin ”, Hillman et al 1984
- “An Outbreak of Common Colds at an Antarctic Base After 17 Weeks of Complete Isolation ”, Allen et al 1973
- “Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts ”
- “Can Gut Bacteria Cause Autism (In Mice)? ”
- “Microbial Regulation of MicroRNA Expression in the Amygdala and Prefrontal Cortex Microbiome ”
- “Genetic Determinants of the Gut Microbiome in UK Twins ”
- “Gut Microbiome Heritability Is Near-Universal but Environmentally Contingent ”
- “Ground Squirrel Microbiomes Are Neat, unlike Human Microbiomes ”, Klee 2025
- “Life on the Subsurface: An Interview With Penelope Boston ”
- “Mechanisms Too Simple for Humans to Design ”
- “Early Results from Birth-Cohort Have Public-Health Implications, As Other Groups Use the Data to Investigate the Microbiome and Mental Health ”
- “Prophages in Marine Bacteria: Dangerous Molecular Time Bombs or the Key to Survival in the Seas? ”
- “Breast-Feeding the Microbiome ”
- “By Manipulating DNA, Researchers Are Trying to Create Microbes That, Once Ingested, Work to Treat a Rare Genetic Condition—A Milestone in Synthetic Biology ”
- “Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand ”
- “A Primer on Why Microbiome Research Is Hard ”
- “Enhanced Cerebral Blood Flow Similarity of the Somatomotor Network in Chronic Insomnia: Transcriptomic Decoding, Gut Microbial Signatures and Phenotypic Roles ”
- Sort By Magic
- Wikipedia (18)
- Miscellaneous
- Bibliography
See Also
Links
“Diet Outperforms Microbial Transplant to Drive Microbiome Recovery in Mice ”, Kennedy et al 2025
Diet outperforms microbial transplant to drive microbiome recovery in mice
“A Novel Cable Bacteria Species With a Distinct Morphology and Genomic Potential ”, Hiralal et al 2025
A novel cable bacteria species with a distinct morphology and genomic potential
“How a Biofilm’s Strange Shape Emerges From Cellular Geometry ”
How a Biofilm’s Strange Shape Emerges From Cellular Geometry
“Parachutes Made of Mucus Change How Some Scientists See the Ocean [Microbiome Harvesting?] ”
Parachutes Made of Mucus Change How Some Scientists See the Ocean [microbiome harvesting?]
“A Brain Microbiome in Salmonids at Homeostasis ”, Mani et al 2024
“Cells Across the Tree of Life Exchange ‘Text Messages’ Using RNA ”
Cells Across the Tree of Life Exchange ‘Text Messages’ Using RNA
“Direct Interaction between Marine Cyanobacteria Mediated by Nanotubes ”, Angulo-Cánovas et al 2024
Direct interaction between marine cyanobacteria mediated by nanotubes
“Contribution of the Patient Microbiome to Surgical Site Infection and Antibiotic Prophylaxis Failure in Spine Surgery ”, Long et al 2024
“Emergence of Large-Scale Mechanical Spiral Waves in Bacterial Living Matter ”, Liu et al 2024
Emergence of large-scale mechanical spiral waves in bacterial living matter
“Cellular Arrangement Impacts Metabolic Activity and Antibiotic Tolerance in Pseudomonas Aeruginosa Biofilms ”, Dayton et al 2024
“Adaptive Immune Receptor Repertoire Analysis ”, Mhanna et al 2024
“Viroid-Like Colonists of Human Microbiomes ”, Zheludev et al 2024
“From Reinforcement Learning to Agency: Frameworks for Understanding Basal Cognition ”, Seifert et al 2024
From reinforcement learning to agency: Frameworks for understanding basal cognition
“Through the Looking Glass, and What Zheludev Et Al 2024 Found There ”
Through the Looking Glass, and What Zheludev et al 2024 Found There
“Pervasive Selective Sweeps across Human Gut Microbiomes ”, Garud & Wolff 2023
“The Biophysical Basis of Bacterial Colony Growth ”, Pokhrel et al 2023
“Integration of 168,000 Samples Reveals Global Patterns of the Human Gut Microbiome ”, Abdill et al 2023
Integration of 168,000 samples reveals global patterns of the human gut microbiome
“Questioning the Foundations of the Gut Microbiota and Obesity ”, Dalby 2023
Questioning the foundations of the gut microbiota and obesity
“Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies ”, Kennedy et al 2023
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
“Effectiveness of Fecal Microbiota Transplantation for Weight Loss in Patients With Obesity Undergoing Bariatric Surgery: A Randomized Clinical Trial ”, Lahtinen et al 2022
“Microbiome-Driven Breeding Strategy Potentially Improves Beef Fatty Acid Profile Benefiting Human Health and Reduces Methane Emissions ”, Martínez-Álvaro et al 2022
“Genesis of Fecal Flotation Is Causally Linked to Gut Microbial Colonization in Mice ”, Aalam et al 2022
Genesis of fecal flotation is causally linked to gut microbial colonization in mice
“Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-Like Behaviors ”, Rivet-Noor et al 2022
Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-like Behaviors
“Personalized Microbiome-Driven Effects of Non-Nutritive Sweeteners on Human Glucose Tolerance ”, Suez et al 2022
Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance
“Widespread Horizontal Gene Transfer between Plants and Their Microbiota ”, Haimlich et al 2022
Widespread horizontal gene transfer between plants and their microbiota
“No Evidence for a Common Blood Microbiome Based on a Population Study of 9,770 Healthy Humans ”, Tan et al 2022
No evidence for a common blood microbiome based on a population study of 9,770 healthy humans
“Transcardial Injection and Vascular Distribution of Microalgae in Xenopus Laevis As Means to Supply the Brain With Photosynthetic Oxygen ”, Özugur et al 2022
“Comparison Of The Gut Microbiota In Different Age Groups In China ”, Yan et al 2022
Comparison Of The Gut Microbiota In Different Age Groups In China
“Longevity, Cellular Senescence and the Gut Microbiome: Lessons to Be Learned from Crocodiles ”, Siddiqui et al 2021
Longevity, cellular senescence and the gut microbiome: lessons to be learned from crocodiles
“Temporal Variability in Quantitative Human Gut Microbiome Profiles and Implications for Clinical Research ”, Vandeputte et al 2021
“Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome ”, Figueroa et al 2021
Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome
“Autism-Related Dietary Preferences Mediate Autism-Gut Microbiome Associations ”, Yap et al 2021
Autism-related dietary preferences mediate autism-gut microbiome associations
“Genetic Innovations in Animal-Microbe Symbioses ”, Perreau & Moran 2021
“Black Tea Quality Is Highly Affected during Processing by Its Leaf Surface Microbiome ”, Tong et al 2021
Black Tea Quality is Highly Affected during Processing by its Leaf Surface Microbiome
“Exploring the Boundaries of Microbial Habitability in Soil ”, Dragone et al 2021
“The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders ”, Richards et al 2021
“Kin Selection Explains the Evolution of Cooperation in the Gut Microbiota ”, Simonet & McNally 2021
Kin selection explains the evolution of cooperation in the gut microbiota
“The Diversity and Function of Sourdough Starter Microbiomes ”, Landis et al 2021
“Microbiome Connections With Host Metabolism and Habitual Diet from 1,098 Deeply Phenotyped Individuals ”, Asnicar et al 2021
“Engineering Complex Communities by Directed Evolution ”, Chang et al 2021
“Green Oxygen Power Plants in the Brain Rescue Neuronal Activity ”, Özugur et al 2021
Green oxygen power plants in the brain rescue neuronal activity
“The Lungfish Cocoon Is a Living Tissue With Antimicrobial Functions ”, Heimroth et al 2021
The lungfish cocoon is a living tissue with antimicrobial functions
“Faecal Microbiota Transplant from Aged Donor Mice Affects Spatial Learning and Memory via Modulating Hippocampal Synaptic Plasticity-Related and Neurotransmission-Related Proteins in Young Recipients ”, D’Amato et al 2020
“Combined Effects of Host Genetics and Diet on Human Gut Microbiota and Incident Disease in a Single Population Cohort ”, Qin et al 2020
“Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor ”, Vuillemin et al 2020
Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor
“Human Postprandial Responses to Food and Potential for Precision Nutrition ”, Berry et al 2020
Human postprandial responses to food and potential for precision nutrition
“Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents ”, Walter et al 2020
“A Look Back at 2019: Progress Towards the Treatment of Aging As a Medical Condition ”, Reason 2019
A Look Back at 2019: Progress Towards the Treatment of Aging as a Medical Condition
“The Interplay between Host Genetics and the Gut Microbiome Reveals Common and Distinct Microbiome Features for Human Complex Diseases ”, Xu et al 2019
“A 5700 Year-Old Human Genome and Oral Microbiome from Chewed Birch Pitch ”, Jensen et al 2019
A 5700 year-old human genome and oral microbiome from chewed birch pitch
“The Urinary Tract Microbiome in Older Women Exhibits Host Genetics and Environmental Influences ”, Adebayo et al 2019
The urinary tract microbiome in older women exhibits host genetics and environmental influences
“Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome ”, Pereira et al 2019
Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome
“Maybe Your Zoloft Stopped Working Because A Liver Fluke Tried To Turn Your Nth-Great-Grandmother Into A Zombie ”, Alexander 2019
“Long-Term Dietary Intervention Reveals Resilience of the Gut Microbiota despite Changes in Diet and Weight ”, Fragiadakis et al 2019
“The Importance of the Microbiome in Bariatric Surgery: a Systematic Review ”, Luijten et al 2019
The Importance of the Microbiome in Bariatric Surgery: a Systematic Review
“Social Evolution of Innate Immunity Evasion in a Virus ”, Domingo-Calap et al 2019
“Supplementation With Akkermansia Muciniphila in Overweight and Obese Human Volunteers: a Proof-Of-Concept Exploratory Study ”, Depommier et al 2019
“The Pros, Cons, and Many Unknowns of Probiotics ”, Suez et al 2019
The pros, cons, and many unknowns of probiotics :
View PDF:
“The Neuroactive Potential of the Human Gut Microbiota in Quality of Life and Depression ”, Valles-Colomer et al 2019
The neuroactive potential of the human gut microbiota in quality of life and depression :
“Bacterial Variability in the Mammalian Gut Captured by a Single-Cell Synthetic Oscillator ”, Riglar et al 2019
Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator
“Gut Microbiome Response to a Modern Paleolithic Diet in a Western Lifestyle Context ”, Barone et al 2018
Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context
“Biological and Cultural Drivers of Oral Microbiota in Medieval and Post-Medieval London, UK ”, Farrer et al 2018
Biological and cultural drivers of oral microbiota in Medieval and Post-Medieval London, UK
“Anti-Aging Food That Improves Markers of Health in Senior Dogs by Modulating Gut Microbiota and Metabolite Profiles ”, Gebreselassie et al 2018
“Dynamic Linear Models Guide Design and Analysis of Microbiota Studies within Artificial Human Guts ”, Silverman et al 2018
Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
“Parkinson’s Disease and Bacteriophages As Its Overlooked Contributors ”, Tetz et al 2018
Parkinson’s disease and bacteriophages as its overlooked contributors
“Effects of Exclusive Breastfeeding on Infant Gut Microbiota: a Meta-Analysis across Studies and Populations ”, Ho et al 2018
“The Drosophila Microbiome Has a Limited Influence on Sleep, Activity, and Courtship Behaviors ”, Selkrig et al 2018
The Drosophila microbiome has a limited influence on sleep, activity, and courtship behaviors
“Gut Microbiome Transition across a Lifestyle Gradient in Himalaya ”, Jha et al 2018
Gut microbiome transition across a lifestyle gradient in Himalaya
“An Interventional Soylent Diet Increases the Bacteroidetes to Firmicutes Ratio in Human Gut Microbiome Communities: a Randomized Controlled Trial ”, Hsu et al 2017
“Ice Nucleation Active Bacteria in Precipitation Are Genetically Diverse and Nucleate Ice by Employing Different Mechanisms ”, Failor et al 2017
“Environmental Factors Dominate over Host Genetics in Shaping Human Gut Microbiota Composition ”, Rothschild et al 2017
Environmental factors dominate over host genetics in shaping human gut microbiota composition
“Metformin Alters the Gut Microbiome of Individuals With Treatment-Naive Type 2 Diabetes, Contributing to the Therapeutic Effects of the Drug ”, Wu et al 2017
“Commensal Bacteria and Essential Amino Acids Control Food Choice Behavior and Reproduction ”, Leitão-Gonçalves et al 2017
Commensal bacteria and essential amino acids control food choice behavior and reproduction
“Bioaerosol Generation by Raindrops on Soil ”, Joung et al 2017
“Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota ”, Li et al 2017
View PDF:
“Transient Rapamycin Treatment Can Increase Lifespan and Healthspan in Middle-Aged Mice ”, Bitto et al 2016
Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice
“The Intestinal Microbiome in Bariatric Surgery Patients ”, Peat et al 2015
“Sequence-Specific Antimicrobials Using Efficiently Delivered RNA-Guided Nucleases ”, Citorik et al 2014
Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases
“Human Genetics Shape the Gut Microbiome ”, Goodrich et al 2014
“Is Eating Behavior Manipulated by the Gastrointestinal Microbiota? Evolutionary Pressures and Potential Mechanisms ”, Alcock et al 2014
“Host-Microbe Interactions Have Shaped the Genetic Architecture of Inflammatory Bowel Disease ”, Jostins et al 2012
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
“Transfer of Carbohydrate-Active Enzymes from Marine Bacteria to Japanese Gut Microbiota ”, Hehemann et al 2010
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
“Sepsis and Septic Shock: A History ”, Funk et al 2009
“Ice Nucleation Active Bacteria and Their Potential Role in Precipitation ”, Morris et al 2004
Ice nucleation active bacteria and their potential role in precipitation
“Bacteriophage Tales ”, Brenner 1997
“Dietary Taurine Requirement of Cats Is Determined by Microbial Degradation of Taurine in the Gut ”, Morris et al 1994
Dietary Taurine Requirement of Cats is Determined by Microbial Degradation of Taurine in the Gut
“Recent Advances in the Development of a Streptococcus Mutans Vaccine ”, Klein & Scholler 1988
Recent Advances in the Development of a Streptococcus mutans Vaccine
“Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin ”, Hillman et al 1987
“Colonization of the Human Oral Cavity by a Strain of Streptococcus Mutans ”, Hillman et al 1985
Colonization of the Human Oral Cavity by a Strain of Streptococcus mutans
“Isolation of a Streptococcus Mutans Strain Producing a Novel Bacteriocin ”, Hillman et al 1984
Isolation of a Streptococcus mutans strain producing a novel bacteriocin
“An Outbreak of Common Colds at an Antarctic Base After 17 Weeks of Complete Isolation ”, Allen et al 1973
An outbreak of common colds at an Antarctic base after 17 weeks of complete isolation
“Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts ”
“Can Gut Bacteria Cause Autism (In Mice)? ”
“Microbial Regulation of MicroRNA Expression in the Amygdala and Prefrontal Cortex Microbiome ”
Microbial regulation of microRNA expression in the amygdala and prefrontal cortex Microbiome
“Genetic Determinants of the Gut Microbiome in UK Twins ”
“Gut Microbiome Heritability Is Near-Universal but Environmentally Contingent ”
Gut microbiome heritability is near-universal but environmentally contingent
“Ground Squirrel Microbiomes Are Neat, unlike Human Microbiomes ”, Klee 2025
Ground squirrel microbiomes are neat, unlike human microbiomes
“Life on the Subsurface: An Interview With Penelope Boston ”
“Mechanisms Too Simple for Humans to Design ”
“Early Results from Birth-Cohort Have Public-Health Implications, As Other Groups Use the Data to Investigate the Microbiome and Mental Health ”
“Prophages in Marine Bacteria: Dangerous Molecular Time Bombs or the Key to Survival in the Seas? ”
Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? :
“Breast-Feeding the Microbiome ”
“By Manipulating DNA, Researchers Are Trying to Create Microbes That, Once Ingested, Work to Treat a Rare Genetic Condition—A Milestone in Synthetic Biology ”
“Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand ”
Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand
“A Primer on Why Microbiome Research Is Hard ”
“Enhanced Cerebral Blood Flow Similarity of the Somatomotor Network in Chronic Insomnia: Transcriptomic Decoding, Gut Microbial Signatures and Phenotypic Roles ”
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Wikipedia (18)
Miscellaneous
/doc/genetics/microbiome/2021-tong-figure3-microbiomebyprocessing.png:/doc/genetics/microbiome/2014-rohwer-lifeinourphageworld.pdf:View PDF (136MB):
/doc/genetics/microbiome/2014-rohwer-lifeinourphageworld.pdf/doc/genetics/microbiome/1987-hillman-figure1-crowdingoutofbadstreptococcusmutansbynewbacteria.jpg:http://www.stephanguyenet.com/microbiota-and-obesity-is-it-all-hype/:https://www.astralcodexten.com/p/defying-cavity-lantern-bioworks-faq:https://www.atlasobscura.com/articles/agar-art-dangers-of-bacteria-arthttps://www.cell.com/cell-reports/fulltext/S2211-1247(19)30181-0https://www.embopress.org/doi/full/10.1038/s44321-025-00219-1https://www.fda.gov/news-events/press-announcements/fda-approves-first-fecal-microbiota-product:https://www.nytimes.com/2022/09/29/science/cancer-tumors-fungi-bacteria-microbiome.htmlhttps://www.nytimes.com/2023/11/12/science/vultures-conservation-intelligence.htmlhttps://www.outsideonline.com/health/training-performance/antibiotics-exercise-research-2022/https://www.popsci.com/scitech/article/2008-01/germ-could-save-your-life/:https://www.quantamagazine.org/cellular-self-destruction-may-be-ancient-but-why-20240306/https://www.quantamagazine.org/mobile-genes-from-the-mother-shape-the-babys-microbiome-20230117/:https://www.quantamagazine.org/the-quest-for-simple-rules-to-build-a-microbial-community-20240117/:https://www.sciencedirect.com/science/article/pii/S2451945622002355https://www.thelancet.com/journals/lanmic/article/PIIS2666-5247(23)00319-1/fulltext
Bibliography
2025-kennedy.pdf: “Diet Outperforms Microbial Transplant to Drive Microbiome Recovery in Mice ”,https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002205: “Cellular Arrangement Impacts Metabolic Activity and Antibiotic Tolerance in Pseudomonas Aeruginosa Biofilms ”,2023-kennedy.pdf: “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies ”,https://www.sciencedirect.com/science/article/pii/S2212877821000156: “The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders ”,2019-luijten.pdf: “The Importance of the Microbiome in Bariatric Surgery: a Systematic Review ”,1987-hillman.pdf: “Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin ”,