- See Also
-
Links
- “Emergence of Large-Scale Mechanical Spiral Waves in Bacterial Living Matter”, Liu et al 2024
- “Viroid-Like Colonists of Human Microbiomes”, Zheludev et al 2024
- “From Reinforcement Learning to Agency: Frameworks for Understanding Basal Cognition”, Seifert et al 2024
- “Pervasive Selective Sweeps across Human Gut Microbiomes”, Garud & Wolff 2023
- “Integration of 168,000 Samples Reveals Global Patterns of the Human Gut Microbiome”, Abdill et al 2023
- “Questioning the Foundations of the Gut Microbiota and Obesity”, Dalby 2023
- “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies”, Kennedy et al 2023
- “Effectiveness of Fecal Microbiota Transplantation for Weight Loss in Patients With Obesity Undergoing Bariatric Surgery: A Randomized Clinical Trial”, Lahtinen et al 2022
- “Microbiome-Driven Breeding Strategy Potentially Improves Beef Fatty Acid Profile Benefiting Human Health and Reduces Methane Emissions”, Martínez-Álvaro et al 2022
- “Genesis of Fecal Flotation Is Causally Linked to Gut Microbial Colonization in Mice”, Aalam et al 2022
- “Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-Like Behaviors”, Rivet-Noor et al 2022
- “Personalized Microbiome-Driven Effects of Non-Nutritive Sweeteners on Human Glucose Tolerance”, Suez et al 2022
- “Widespread Horizontal Gene Transfer between Plants and Their Microbiota”, Haimlich et al 2022
- “No Evidence for a Common Blood Microbiome Based on a Population Study of 9,770 Healthy Humans”, Tan et al 2022
- “Anatomy Promotes Neutral Coexistence of Strains in the Human Skin Microbiome”, Conwill et al 2022
- “Transcardial Injection and Vascular Distribution of Microalgae in Xenopus Laevis As Means to Supply the Brain With Photosynthetic Oxygen”, Özugur et al 2022
- “Comparison Of The Gut Microbiota In Different Age Groups In China”, Yan et al 2022
- “Longevity, Cellular Senescence and the Gut Microbiome: Lessons to Be Learned from Crocodiles”, Siddiqui et al 2021
- “Temporal Variability in Quantitative Human Gut Microbiome Profiles and Implications for Clinical Research”, Vandeputte et al 2021
- “Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome”, Figueroa et al 2021
- “Autism-Related Dietary Preferences Mediate Autism-Gut Microbiome Associations”, Yap et al 2021
- “Genetic Innovations in Animal-Microbe Symbioses”, Perreau & Moran 2021
- “Black Tea Quality Is Highly Affected during Processing by Its Leaf Surface Microbiome”, Tong et al 2021
- “The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders”, Richards et al 2021
- “Kin Selection Explains the Evolution of Cooperation in the Gut Microbiota”, Simonet & McNally 2021
- “The Diversity and Function of Sourdough Starter Microbiomes”, Landis et al 2021
- “Microbiome Connections With Host Metabolism and Habitual Diet from 1,098 Deeply Phenotyped Individuals”, Asnicar et al 2021
- “Engineering Complex Communities by Directed Evolution”, Chang et al 2021
- “Green Oxygen Power Plants in the Brain Rescue Neuronal Activity”, Özugur et al 2021
- “The Lungfish Cocoon Is a Living Tissue With Antimicrobial Functions”, Heimroth et al 2021
- “Faecal Microbiota Transplant from Aged Donor Mice Affects Spatial Learning and Memory via Modulating Hippocampal Synaptic Plasticity-Related and Neurotransmission-Related Proteins in Young Recipients”, D’Amato et al 2020
- “Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor”, Vuillemin et al 2020
- “Human Postprandial Responses to Food and Potential for Precision Nutrition”, Berry et al 2020
- “A Look Back at 2019: Progress Towards the Treatment of Aging As a Medical Condition”, Reason 2019
- “The Interplay between Host Genetics and the Gut Microbiome Reveals Common and Distinct Microbiome Features for Human Complex Diseases”, Xu et al 2019
- “A 5700 Year-Old Human Genome and Oral Microbiome from Chewed Birch Pitch”, Jensen et al 2019
- “The Urinary Tract Microbiome in Older Women Exhibits Host Genetics and Environmental Influences”, Adebayo et al 2019
- “Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome”, Pereira et al 2019
- “Long-Term Dietary Intervention Reveals Resilience of the Gut Microbiota despite Changes in Diet and Weight”, Fragiadakis et al 2019
- “The Importance of the Microbiome in Bariatric Surgery: a Systematic Review”, Luijten et al 2019
- “Supplementation With Akkermansia Muciniphila in Overweight and Obese Human Volunteers: a Proof-Of-Concept Exploratory Study”, Depommier et al 2019
- “The Pros, Cons, and Many Unknowns of Probiotics”, Suez et al 2019
- “The Neuroactive Potential of the Human Gut Microbiota in Quality of Life and Depression”, Valles-Colomer et al 2019
- “Bacterial Variability in the Mammalian Gut Captured by a Single-Cell Synthetic Oscillator”, Riglar et al 2019
- “Gut Microbiome Response to a Modern Paleolithic Diet in a Western Lifestyle Context”, Barone et al 2018
- “Biological and Cultural Drivers of Oral Microbiota in Medieval and Post-Medieval London, UK”, Farrer et al 2018
- “Anti-Aging Food That Improves Markers of Health in Senior Dogs by Modulating Gut Microbiota and Metabolite Profiles”, Gebreselassie et al 2018
- “Dynamic Linear Models Guide Design and Analysis of Microbiota Studies within Artificial Human Guts”, Silverman et al 2018
- “Parkinson’s Disease and Bacteriophages As Its Overlooked Contributors”, Tetz et al 2018
- “Effects of Exclusive Breastfeeding on Infant Gut Microbiota: a Meta-Analysis across Studies and Populations”, Ho et al 2018
- “The Drosophila Microbiome Has a Limited Influence on Sleep, Activity, and Courtship Behaviors”, Selkrig et al 2018
- “Gut Microbiome Transition across a Lifestyle Gradient in Himalaya”, Jha et al 2018
- “An Interventional Soylent Diet Increases the Bacteroidetes to Firmicutes Ratio in Human Gut Microbiome Communities: a Randomized Controlled Trial”, Hsu et al 2017
- “Environmental Factors Dominate over Host Genetics in Shaping Human Gut Microbiota Composition”, Rothschild et al 2017
- “Commensal Bacteria and Essential Amino Acids Control Food Choice Behavior and Reproduction”, Leitão-Gonçalves et al 2017
- “Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota”, Li et al 2017
- “Transient Rapamycin Treatment Can Increase Lifespan and Healthspan in Middle-Aged Mice”, Bitto et al 2016
- “The Intestinal Microbiome in Bariatric Surgery Patients”, Peat et al 2015
- “Sequence-Specific Antimicrobials Using Efficiently Delivered RNA-Guided Nucleases”, Citorik et al 2014
- “Human Genetics Shape the Gut Microbiome”, Goodrich et al 2014
- “Is Eating Behavior Manipulated by the Gastrointestinal Microbiota? Evolutionary Pressures and Potential Mechanisms”, Alcock et al 2014
- “Host-Microbe Interactions Have Shaped the Genetic Architecture of Inflammatory Bowel Disease”, Jostins et al 2012
- “Transfer of Carbohydrate-Active Enzymes from Marine Bacteria to Japanese Gut Microbiota”, Hehemann et al 2010
- “Dietary Taurine Requirement of Cats Is Determined by Microbial Degradation of Taurine in the Gut”, Morris et al 1994
- “Recent Advances in the Development of a Streptococcus Mutans Vaccine”, Klein & Scholler 1988
- “Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin”, Hillman et al 1987
- “Colonization of the Human Oral Cavity by a Strain of Streptococcus Mutans”, Hillman et al 1985
- “Isolation of a Streptococcus Mutans Strain Producing a Novel Bacteriocin”, Hillman et al 1984
- “Can Gut Bacteria Cause Autism (in Mice)?”
- “Microbial Regulation of MicroRNA Expression in the Amygdala and Prefrontal Cortex Microbiome”
- “Early Results from Birth-Cohort Have Public-Health Implications, As Other Groups Use the Data to Investigate the Microbiome and Mental Health”
- “Breast-Feeding the Microbiome”
- “By Manipulating DNA, Researchers Are Trying to Create Microbes That, Once Ingested, Work to Treat a Rare Genetic Condition—A Milestone in Synthetic Biology”
- “Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand”
- Wikipedia
- Miscellaneous
- Link Bibliography
See Also
Links
“Emergence of Large-Scale Mechanical Spiral Waves in Bacterial Living Matter”, Liu et al 2024
Emergence of large-scale mechanical spiral waves in bacterial living matter
“Viroid-Like Colonists of Human Microbiomes”, Zheludev et al 2024
“From Reinforcement Learning to Agency: Frameworks for Understanding Basal Cognition”, Seifert et al 2024
From reinforcement learning to agency: Frameworks for understanding basal cognition
“Pervasive Selective Sweeps across Human Gut Microbiomes”, Garud & Wolff 2023
“Integration of 168,000 Samples Reveals Global Patterns of the Human Gut Microbiome”, Abdill et al 2023
Integration of 168,000 samples reveals global patterns of the human gut microbiome
“Questioning the Foundations of the Gut Microbiota and Obesity”, Dalby 2023
Questioning the foundations of the gut microbiota and obesity
“Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies”, Kennedy et al 2023
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
“Effectiveness of Fecal Microbiota Transplantation for Weight Loss in Patients With Obesity Undergoing Bariatric Surgery: A Randomized Clinical Trial”, Lahtinen et al 2022
“Microbiome-Driven Breeding Strategy Potentially Improves Beef Fatty Acid Profile Benefiting Human Health and Reduces Methane Emissions”, Martínez-Álvaro et al 2022
“Genesis of Fecal Flotation Is Causally Linked to Gut Microbial Colonization in Mice”, Aalam et al 2022
Genesis of fecal flotation is causally linked to gut microbial colonization in mice
“Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-Like Behaviors”, Rivet-Noor et al 2022
Stress-Induced Mucosal Layer Disruption Drives Gut Dysbiosis and Depressive-like Behaviors
“Personalized Microbiome-Driven Effects of Non-Nutritive Sweeteners on Human Glucose Tolerance”, Suez et al 2022
Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance
“Widespread Horizontal Gene Transfer between Plants and Their Microbiota”, Haimlich et al 2022
Widespread horizontal gene transfer between plants and their microbiota
“No Evidence for a Common Blood Microbiome Based on a Population Study of 9,770 Healthy Humans”, Tan et al 2022
No evidence for a common blood microbiome based on a population study of 9,770 healthy humans
“Anatomy Promotes Neutral Coexistence of Strains in the Human Skin Microbiome”, Conwill et al 2022
Anatomy promotes neutral coexistence of strains in the human skin microbiome
“Transcardial Injection and Vascular Distribution of Microalgae in Xenopus Laevis As Means to Supply the Brain With Photosynthetic Oxygen”, Özugur et al 2022
“Comparison Of The Gut Microbiota In Different Age Groups In China”, Yan et al 2022
Comparison Of The Gut Microbiota In Different Age Groups In China
“Longevity, Cellular Senescence and the Gut Microbiome: Lessons to Be Learned from Crocodiles”, Siddiqui et al 2021
Longevity, cellular senescence and the gut microbiome: lessons to be learned from crocodiles
“Temporal Variability in Quantitative Human Gut Microbiome Profiles and Implications for Clinical Research”, Vandeputte et al 2021
“Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome”, Figueroa et al 2021
Why Did the Bee Eat the Chicken? Symbiont Gain, Loss, and Retention in the Vulture Bee Microbiome
“Autism-Related Dietary Preferences Mediate Autism-Gut Microbiome Associations”, Yap et al 2021
Autism-related dietary preferences mediate autism-gut microbiome associations
“Genetic Innovations in Animal-Microbe Symbioses”, Perreau & Moran 2021
“Black Tea Quality Is Highly Affected during Processing by Its Leaf Surface Microbiome”, Tong et al 2021
Black Tea Quality is Highly Affected during Processing by its Leaf Surface Microbiome
“The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders”, Richards et al 2021
“Kin Selection Explains the Evolution of Cooperation in the Gut Microbiota”, Simonet & McNally 2021
Kin selection explains the evolution of cooperation in the gut microbiota
“The Diversity and Function of Sourdough Starter Microbiomes”, Landis et al 2021
“Microbiome Connections With Host Metabolism and Habitual Diet from 1,098 Deeply Phenotyped Individuals”, Asnicar et al 2021
“Engineering Complex Communities by Directed Evolution”, Chang et al 2021
“Green Oxygen Power Plants in the Brain Rescue Neuronal Activity”, Özugur et al 2021
Green oxygen power plants in the brain rescue neuronal activity
“The Lungfish Cocoon Is a Living Tissue With Antimicrobial Functions”, Heimroth et al 2021
The lungfish cocoon is a living tissue with antimicrobial functions
“Faecal Microbiota Transplant from Aged Donor Mice Affects Spatial Learning and Memory via Modulating Hippocampal Synaptic Plasticity-Related and Neurotransmission-Related Proteins in Young Recipients”, D’Amato et al 2020
“Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor”, Vuillemin et al 2020
Atribacteria reproducing over millions of years in the Atlantic abyssal subseafloor
“Human Postprandial Responses to Food and Potential for Precision Nutrition”, Berry et al 2020
Human postprandial responses to food and potential for precision nutrition
“A Look Back at 2019: Progress Towards the Treatment of Aging As a Medical Condition”, Reason 2019
A Look Back at 2019: Progress Towards the Treatment of Aging as a Medical Condition
“The Interplay between Host Genetics and the Gut Microbiome Reveals Common and Distinct Microbiome Features for Human Complex Diseases”, Xu et al 2019
“A 5700 Year-Old Human Genome and Oral Microbiome from Chewed Birch Pitch”, Jensen et al 2019
A 5700 year-old human genome and oral microbiome from chewed birch pitch
“The Urinary Tract Microbiome in Older Women Exhibits Host Genetics and Environmental Influences”, Adebayo et al 2019
The urinary tract microbiome in older women exhibits host genetics and environmental influences
“Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome”, Pereira et al 2019
Depression’s Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome
“Long-Term Dietary Intervention Reveals Resilience of the Gut Microbiota despite Changes in Diet and Weight”, Fragiadakis et al 2019
“The Importance of the Microbiome in Bariatric Surgery: a Systematic Review”, Luijten et al 2019
The Importance of the Microbiome in Bariatric Surgery: a Systematic Review
“Supplementation With Akkermansia Muciniphila in Overweight and Obese Human Volunteers: a Proof-Of-Concept Exploratory Study”, Depommier et al 2019
“The Pros, Cons, and Many Unknowns of Probiotics”, Suez et al 2019
The pros, cons, and many unknowns of probiotics:
View PDF:
“The Neuroactive Potential of the Human Gut Microbiota in Quality of Life and Depression”, Valles-Colomer et al 2019
The neuroactive potential of the human gut microbiota in quality of life and depression:
“Bacterial Variability in the Mammalian Gut Captured by a Single-Cell Synthetic Oscillator”, Riglar et al 2019
Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator
“Gut Microbiome Response to a Modern Paleolithic Diet in a Western Lifestyle Context”, Barone et al 2018
Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context
“Biological and Cultural Drivers of Oral Microbiota in Medieval and Post-Medieval London, UK”, Farrer et al 2018
Biological and cultural drivers of oral microbiota in Medieval and Post-Medieval London, UK
“Anti-Aging Food That Improves Markers of Health in Senior Dogs by Modulating Gut Microbiota and Metabolite Profiles”, Gebreselassie et al 2018
“Dynamic Linear Models Guide Design and Analysis of Microbiota Studies within Artificial Human Guts”, Silverman et al 2018
Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
“Parkinson’s Disease and Bacteriophages As Its Overlooked Contributors”, Tetz et al 2018
Parkinson’s disease and bacteriophages as its overlooked contributors
“Effects of Exclusive Breastfeeding on Infant Gut Microbiota: a Meta-Analysis across Studies and Populations”, Ho et al 2018
“The Drosophila Microbiome Has a Limited Influence on Sleep, Activity, and Courtship Behaviors”, Selkrig et al 2018
The Drosophila microbiome has a limited influence on sleep, activity, and courtship behaviors
“Gut Microbiome Transition across a Lifestyle Gradient in Himalaya”, Jha et al 2018
Gut microbiome transition across a lifestyle gradient in Himalaya
“An Interventional Soylent Diet Increases the Bacteroidetes to Firmicutes Ratio in Human Gut Microbiome Communities: a Randomized Controlled Trial”, Hsu et al 2017
“Environmental Factors Dominate over Host Genetics in Shaping Human Gut Microbiota Composition”, Rothschild et al 2017
Environmental factors dominate over host genetics in shaping human gut microbiota composition
“Commensal Bacteria and Essential Amino Acids Control Food Choice Behavior and Reproduction”, Leitão-Gonçalves et al 2017
Commensal bacteria and essential amino acids control food choice behavior and reproduction
“Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota”, Li et al 2017
View PDF:
“Transient Rapamycin Treatment Can Increase Lifespan and Healthspan in Middle-Aged Mice”, Bitto et al 2016
Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice
“The Intestinal Microbiome in Bariatric Surgery Patients”, Peat et al 2015
“Sequence-Specific Antimicrobials Using Efficiently Delivered RNA-Guided Nucleases”, Citorik et al 2014
Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases
“Human Genetics Shape the Gut Microbiome”, Goodrich et al 2014
“Is Eating Behavior Manipulated by the Gastrointestinal Microbiota? Evolutionary Pressures and Potential Mechanisms”, Alcock et al 2014
“Host-Microbe Interactions Have Shaped the Genetic Architecture of Inflammatory Bowel Disease”, Jostins et al 2012
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
“Transfer of Carbohydrate-Active Enzymes from Marine Bacteria to Japanese Gut Microbiota”, Hehemann et al 2010
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
“Dietary Taurine Requirement of Cats Is Determined by Microbial Degradation of Taurine in the Gut”, Morris et al 1994
Dietary Taurine Requirement of Cats is Determined by Microbial Degradation of Taurine in the Gut
“Recent Advances in the Development of a Streptococcus Mutans Vaccine”, Klein & Scholler 1988
Recent Advances in the Development of a Streptococcus mutans Vaccine
“Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin”, Hillman et al 1987
“Colonization of the Human Oral Cavity by a Strain of Streptococcus Mutans”, Hillman et al 1985
Colonization of the Human Oral Cavity by a Strain of Streptococcus mutans
“Isolation of a Streptococcus Mutans Strain Producing a Novel Bacteriocin”, Hillman et al 1984
Isolation of a Streptococcus mutans strain producing a novel bacteriocin
“Can Gut Bacteria Cause Autism (in Mice)?”
“Microbial Regulation of MicroRNA Expression in the Amygdala and Prefrontal Cortex Microbiome”
Microbial regulation of microRNA expression in the amygdala and prefrontal cortex Microbiome
“Early Results from Birth-Cohort Have Public-Health Implications, As Other Groups Use the Data to Investigate the Microbiome and Mental Health”
“Breast-Feeding the Microbiome”
“By Manipulating DNA, Researchers Are Trying to Create Microbes That, Once Ingested, Work to Treat a Rare Genetic Condition—A Milestone in Synthetic Biology”
“Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand”
Earth’s Mysterious, Deep-Dwelling Microbes We’re Only Starting to Understand
Wikipedia
Miscellaneous
-
/doc/genetics/microbiome/2021-tong-figure3-microbiomebyprocessing.png: -
/doc/genetics/microbiome/1987-hillman-figure1-crowdingoutofbadstreptococcusmutansbynewbacteria.jpg: -
http://www.stephanguyenet.com/microbiota-and-obesity-is-it-all-hype/: -
https://www.astralcodexten.com/p/defying-cavity-lantern-bioworks-faq: -
https://www.atlasobscura.com/articles/agar-art-dangers-of-bacteria-art -
https://www.cell.com/cell-reports/fulltext/S2211-1247(19)30181-0 -
https://www.fda.gov/news-events/press-announcements/fda-approves-first-fecal-microbiota-product: -
https://www.nytimes.com/2022/09/29/science/cancer-tumors-fungi-bacteria-microbiome.html -
https://www.nytimes.com/2023/11/12/science/vultures-conservation-intelligence.html -
https://www.outsideonline.com/health/training-performance/antibiotics-exercise-research-2022/ -
https://www.popsci.com/scitech/article/2008-01/germ-could-save-your-life/: -
https://www.quantamagazine.org/cellular-self-destruction-may-be-ancient-but-why-20240306/ -
https://www.quantamagazine.org/mobile-genes-from-the-mother-shape-the-babys-microbiome-20230117/: -
https://www.quantamagazine.org/the-quest-for-simple-rules-to-build-a-microbial-community-20240117/: -
https://www.sciencedirect.com/science/article/pii/S2451945622002355 -
https://www.thelancet.com/journals/lanmic/article/PIIS2666-5247(23)00319-1/fulltext
Link Bibliography
-
2023-kennedy.pdf: “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies”, -
https://www.sciencedirect.com/science/article/pii/S2212877821000156: “The Gut-Brain Axis: Identifying New Therapeutic Approaches for Type 2 Diabetes, Obesity, and Related Disorders”, -
2019-luijten.pdf: “The Importance of the Microbiome in Bariatric Surgery: a Systematic Review”, -
1987-hillman.pdf: “Colonization of the Human Oral Cavity by a Streptococcus Mutans Mutant Producing Increased Bacteriocin”,