- See Also
-
Links
- “Top-down Design of Protein Nanomaterials With Reinforcement Learning”, Et Al 2022
- “Genome-wide Prediction of Disease Variants With a Deep Protein Language Model”, Et Al 2022
- “Accurate Prediction of Transition Metal Ion Location via Deep Learning”, Et Al 2022
- “HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model As an Alternative”, Et Al 2022
- “OmegaFold: High-resolution De Novo Structure Prediction from Primary Sequence”, Et Al 2022
- “ESMfold: Language Models of Protein Sequences at the Scale of Evolution Enable Accurate Structure Prediction”, Et Al 2022
- “HelixFold: An Efficient Implementation of AlphaFold2 Using PaddlePaddle”, Et Al 2022
- “State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold”, 2022
- “FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours”, Et Al 2022
- “AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor”, Et Al 2022
- “The Accuracy of Protein Structures in Solution Determined by AlphaFold and NMR”, 2022
- “Protein Structure Predictions to Atomic Accuracy With AlphaFold”, 2022
- “Computed Structures of Core Eukaryotic Protein Complexes”, Et Al 2021
- “Towards a Structurally Resolved Human Protein Interaction Network”, Et Al 2021
- “A Structural Biology Community Assessment of AlphaFold 2 Applications”, Et Al 2021
- “Single-sequence Protein Structure Prediction Using Language Models from Deep Learning”, Et Al 2021
- “Can AlphaFold2 Predict Protein-peptide Complex Structures Accurately?”, 2021
- “Deep Neural Language Modeling Enables Functional Protein Generation across Families”, Et Al 2021
- “Accurate Prediction of Protein Structures and Interactions Using a 3-track Network”, Et Al 2021
- “Deep Learning Methods in Protein Structure Prediction”, Et Al 2020
- “Predicting Protein Structures With a Multiplayer Online Game”, Et Al 2010
- Wikipedia
- Miscellaneous
- Link Bibliography
See Also
Links
“Top-down Design of Protein Nanomaterials With Reinforcement Learning”, Et Al 2022
“Top-down design of protein nanomaterials with reinforcement learning”, 2022-09-25 ( ; similar)
“Genome-wide Prediction of Disease Variants With a Deep Protein Language Model”, Et Al 2022
“Genome-wide prediction of disease variants with a deep protein language model”, 2022-08-26 ( ; similar)
“Accurate Prediction of Transition Metal Ion Location via Deep Learning”, Et Al 2022
“Accurate prediction of transition metal ion location via deep learning”, 2022-08-22 (similar)
“HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model As an Alternative”, Et Al 2022
“HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an Alternative”, 2022-07-28 (similar)
“OmegaFold: High-resolution De Novo Structure Prediction from Primary Sequence”, Et Al 2022
“OmegaFold: High-resolution de novo structure prediction from primary sequence”, 2022-07-22 (similar)
“ESMfold: Language Models of Protein Sequences at the Scale of Evolution Enable Accurate Structure Prediction”, Et Al 2022
“ESMfold: Language models of protein sequences at the scale of evolution enable accurate structure prediction”, 2022-07-21 ( ; similar)
“HelixFold: An Efficient Implementation of AlphaFold2 Using PaddlePaddle”, Et Al 2022
“HelixFold: An Efficient Implementation of AlphaFold2 using PaddlePaddle”, 2022-07-12 (similar; bibliography)
“State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold”, 2022
“State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold”, 2022-03-12 (similar)
“FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours”, Et Al 2022
“FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours”, 2022-03-02 ( ; similar; bibliography)
“AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor”, Et Al 2022
“AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor”, 2022-01-21 (similar)
“The Accuracy of Protein Structures in Solution Determined by AlphaFold and NMR”, 2022
“The accuracy of protein structures in solution determined by AlphaFold and NMR”, 2022-01-20 (similar)
“Protein Structure Predictions to Atomic Accuracy With AlphaFold”, 2022
“Computed Structures of Core Eukaryotic Protein Complexes”, Et Al 2021
“Computed structures of core eukaryotic protein complexes”, 2021-11-11 (similar; bibliography)
“Towards a Structurally Resolved Human Protein Interaction Network”, Et Al 2021
“Towards a structurally resolved human protein interaction network”, 2021-11-09 (similar)
“A Structural Biology Community Assessment of AlphaFold 2 Applications”, Et Al 2021
“A structural biology community assessment of AlphaFold 2 applications”, 2021-09-26 (similar)
“Single-sequence Protein Structure Prediction Using Language Models from Deep Learning”, Et Al 2021
“Single-sequence protein structure prediction using language models from deep learning”, 2021-08-04 (similar; bibliography)
“Can AlphaFold2 Predict Protein-peptide Complex Structures Accurately?”, 2021
“Can AlphaFold2 predict protein-peptide complex structures accurately?”, 2021-07-28 (similar)
“Deep Neural Language Modeling Enables Functional Protein Generation across Families”, Et Al 2021
“Deep neural language modeling enables functional protein generation across families”, 2021-07-18 (backlinks; similar)
“Accurate Prediction of Protein Structures and Interactions Using a 3-track Network”, Et Al 2021
“Accurate prediction of protein structures and interactions using a 3-track network”, 2021-06-15 (backlinks; similar)
“Deep Learning Methods in Protein Structure Prediction”, Et Al 2020
“Deep learning methods in protein structure prediction”, 2020 (similar)
“Predicting Protein Structures With a Multiplayer Online Game”, Et Al 2010
“Predicting protein structures with a multiplayer online game”, 2010 (backlinks; similar)
Wikipedia
Miscellaneous
-
https://ccsp.hms.harvard.edu/wp-content/uploads/2020/11/AlphaFold-at-CASP13-AlQuraishi.pdf
-
https://moalquraishi.wordpress.com/2018/12/09/alphafold-casp13-what-just-happened/
-
https://moalquraishi.wordpress.com/2021/07/25/the-alphafold2-method-paper-a-fount-of-good-ideas/
-
https://nitter.moomoo.me/OriolVinyalsML/status/1612514485201166347
-
https://nitter.moomoo.me/maxjaderberg/status/1483098866098524167
-
https://science.sciencemag.org/content/early/2021/07/14/science.abj8754
-
https://subcriticalappraisal.com/2020/Did-DeepMind-solve-the-protein-folding-problem/
-
https://www.deepmind.com/blog/alphafold-reveals-the-structure-of-the-protein-universe
-
https://www.nytimes.com/2021/07/22/technology/deepmind-ai-proteins-folding.html
-
https://www.nytimes.com/2023/01/09/science/artificial-intelligence-proteins.html
-
https://www.technologyreview.com/2022/02/23/1045016/ai-deepmind-demis-hassabis-alphafold/
-
https://www.wired.com/story/ai-software-nearly-predicted-omicrons-tricky-structure/
Link Bibliography
-
https://arxiv.org/abs/2207.05477#baidu
: “HelixFold: An Efficient Implementation of AlphaFold2 Using PaddlePaddle”, Guoxia Wang, Xiaomin Fang, Zhihua Wu, Yiqun Liu, Yang Xue, Yingfei Xiang, Dianhai Yu, Fan Wang, Yanjun Ma: -
https://arxiv.org/abs/2203.00854
: “FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours”, Shenggan Cheng, Ruidong Wu, Zhongming Yu, Binrui Li, Xiwen Zhang, Jian Peng, Yang You: -
2021-humphreys.pdf
: “Computed Structures of Core Eukaryotic Protein Complexes”, : -
https://www.biorxiv.org/content/10.1101/2021.08.02.454840.full
: “Single-sequence Protein Structure Prediction Using Language Models from Deep Learning”, :