“The Perfect Milk Machine: How Big Data Transformed the Dairy Industry: Dairy Scientists Are the Gregor Mendels of the Genomics Age, Developing New Methods for Understanding the Link between Genes and Living Things, All While Quadrupling the Average Cow’s Milk Production Since Your Parents Were Born”, Alexis C. Madrigal2012-05-01 ()⁠:

…Already, Badger-Bluff Fanny Freddie has 346 daughters who are on the books and thousands more that will be added to his progeny count when they start producing milk. This is quite a career for a young animal: He was only born in 2004.

There is a reason, of course, that the semen that Badger-Bluff Fanny Freddie produces has become such a hot commodity in what one artificial-insemination company calls “today’s fast paced cattle semen market.” In January of 2009, before he had a single daughter producing milk, the United States Department of Agriculture took a look at his lineage and more than 50,000 markers on his genome and declared him the best bull in the land. And, three years and 346 milk-providing and data-providing daughters later, it turns out that they were right. “When Freddie [as he is known] had no daughter records our equations predicted from his DNA that he would be the best bull”, USDA research geneticist Paul VanRaden emailed me with a detectable hint of pride. “Now he is the best progeny tested bull (as predicted).”

Data-driven predictions are responsible for a massive transformation of America’s dairy cows. While other industries are just catching on to this whole “big data” thing, the animal sciences—and dairy breeding in particular—have been using large amounts of data since long before VanRaden was calculating the outsized genetic impact of the most sought-after bulls with a pencil and paper in the 1980s. Dairy breeding is perfect for quantitative analysis. Pedigree records have been assiduously kept; relatively easy artificial insemination has helped centralized genetic information in a small number of key bulls since the 1960s; there are a relatively small and easily measurable number of traits—milk production, fat in the milk, protein in the milk, longevity, udder quality—that breeders want to optimize; each cow works for three or four years, which means that farmers invest thousands of dollars into each animal, so it’s worth it to get the best semen money can buy. The economics push breeders to use the genetics.

The bull market (heh) can be reduced to one key statistic, lifetime net merit, though there are many nuances that the single number cannot capture. Net merit denotes the likely additive value of a bull’s genetics. The number is actually denominated in dollars because it is an estimate of how much a bull’s genetic material will likely improve the revenue from a given cow. A very complicated equation weights all of the factors that go into dairy breeding and—voila—you come out with this single number. For example, a bull that could help a cow make an extra 1,000 pounds of milk over her lifetime only gets an increase of $1.38$12012 in net merit while a bull who will help that same cow produce a pound more protein will get $4.69$3.412012 more in net merit. An increase of a single month of predicted productive life yields $48.17$352012 more.

…In 1942, when my father was born, the average dairy cow produced less than 5,000 pounds of milk in its lifetime. Now, the average cow produces over 21,000 pounds of milk. At the same time, the number of dairy cows has decreased from a high of 25 million around the end of World War II to fewer than nine million today…a mere 70 years of quantitative breeding optimized to suit corporate imperatives quadrupled what all previous civilization had accomplished.

…John Cole, yet another USDA animal improvement scientist, generated an estimate of the perfect bull by choosing the optimal observed genetic sequences and hypothetically combining them. He found that the optimal bull would have a net merit value of $10,538.56$7,5152011, which absolutely blows any current bull out of the water. In other words, we’re nowhere near creating the perfect milk machine.