“‘Genome Sequencing’ Tag”,2020-02-22 (epigenetics (aging))⁠:

Bibliography for tag genetics/sequencing, most recent first: 1 related tag, 176 annotations, & 16 links (parent).

• See Also
• Links
  • “How Disease Detectives’ Quick Work Traced Deadly E. Coli Outbreak to McDonald’s Quarter Pounders”
  • “That 800-Year-Old Corpse in the Well? Early Biological Warfare”
  • “Up in the Air: Presence and Collection of EDNA from Air and Air Conditioner Units”, Goray et al 2024
  • “Adaptive Immune Receptor Repertoire Analysis”, Mhanna et al 2024
  • “Narrowing the Diagnostic Gap: Genomes, Episignatures, Long-Read Sequencing, and Health Economic Analyses in an Exome-Negative Intellectual Disability Cohort”, Dias et al 2024
  • “Concordance of Whole-Genome Amplified Embryonic DNA With the Subsequently Born Child”, Li et al 2024
  • “Through the Looking Glass, and What Zheludev Et Al 2024 Found There”
  • “Imputation of Structural Variants Using a Multi-Ancestry Long-Read Sequencing Panel Enables Identification of Disease Associations”, Noyvert et al 2023
  • “A Long-Context Language Model for the Generation of Bacteriophage Genomes”, Shao2023
  • “OneGene PGT: Comprehensive Preimplantation Genetic Testing Method Utilizing Next-Generation Sequencing”, Hornak et al 2023
  • “Whole-Genome Sequencing of Half-A-Million UK Biobank Participants”, Consortium et al 2023
  • “Clinical-Grade Whole Genome Sequencing-Based Haplarithmisis Enables All Forms of Preimplantation Genetic Testing”, Janssen et al 2023
  • “Actionable Genotypes and Their Association With Life Span in Iceland”, Jensson et al 2023
  • “The Landscape of Ancient Human Pathogens in Eurasia from the Stone Age to Historical Times”, Sikora et al 2023
  • “Unambiguous Discrimination of All 20 Proteinogenic Amino Acids and Their Modifications by Nanopore”, Wang et al 2023d
  • “The Complete Sequence of a Human Y Chromosome”, Rhie et al 2023
  • “A 2-Million-Year-Old Microbial and Viral Communities from the Kap København Formation in North Greenland”, Fernandez-Guerra et al 2023
  • “Comparative Genomics of Balto, a Famous Historic Dog, Captures Lost Diversity of 1920s Sled Dogs”, Moon et al 2023
  • “Genomic Analyses of Hair from Ludwig Van Beethoven”, Begg et al 2023
  • “Fighting Rare Cancers: Lessons from Fibrolamellar Hepatocellular Carcinoma”, Simon2023
  • “Hospital’s Water Purification System Stripped out Chlorine, Killing 3 Patients: It Was Supposed to Improve Taste, but Instead Led to Deadly Infections”, Mole2023
  • “Questioning the Fetal Microbiome Illustrates Pitfalls of Low-Biomass Microbial Studies”, Kennedy et al 2023
  • “A Harmonized Public Resource of Deeply Sequenced Diverse Human Genomes”, Koenig et al 2023
  • “Evolutionary Constraint and Innovation across Hundreds of Placental Mammals”, Christmas et al 2023
  • “The History of Coast Salish “Woolly Dogs” Revealed by Ancient Genomics and Indigenous Knowledge”, Lin et al 2023
  • “Why Scientists Dug up the Father of Genetics, Gregor Mendel, and Analyzed His DNA”, Greenfieldboyce2022
  • “Retrieving the Near-Complete Genome of a Threatened Bird from Wild Frozen Samples”, Luo et al 2022
  • “Pathogen Genomics Study of an Early Medieval Community in Germany Reveals Extensive Co-Infections”, Bonczarowska et al 2022
  • “A 2-Million-Year-Old Ecosystem in Greenland Uncovered by Environmental DNA”, Kjær et al 2022
  • “Oldest Known DNA Paints Picture of a Once-Lush Arctic: In Greenland’s Permafrost, Scientists Discovered Two-Million-Year-Old Genetic Material from Scores of Plant and Animal Species, including Mastodons, Geese, Lemmings and Ants”, Zimmer2022
  • “Distilled DeepConsensus: Knowledge Distillation for Fast and Accurate DNA Sequence Correction”, Belyaeva et al 2022
  • “KIN: A Method to Infer Relatedness from Low-Coverage Ancient DNA”, Popli et al 2022
  • “Genetic Insights into the Social Organization of Neanderthals”, Skov et al 2022
  • “Data Descriptor: Human Whole Exome Genotype Data for Alzheimer’s Disease”, Leung et al 2022
  • “Ancient Marine Sediment DNA Reveals Diatom Transition in Antarctica”, Armbrecht et al 2022
  • “Illumina Aims to Push Genetics Beyond the Lab With $200 Genome”, Peebles2022
  • “Genomic Prediction With Whole-Genome Sequence Data in Intensely-Selected Pig Lines”, Ros-Freixedes et al 2022
  • “Haplotype-Resolved Assemblies and Variant Benchmark of a Chinese Quartet”, Jia et al 2022
  • “Developmental Implications of Genetic Testing for Physical Indications”, Baribeau et al 2022
  • “Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care”, Wei et al 2022
  • “23andMe Pins Future on ‘Genomic Health Service’, Therapeutic Development”, Versel2022
  • “Scalable, High Quality, Whole Genome Sequencing from Archived, Newborn, Dried Blood Spots”, Ding et al 2022
  • “Somerton Man Mystery ‘Solved’ As DNA Points to Man’s Identity, Professor Claims”, Whiteman2022
  • “Imputation of Ancient Genomes”, Mota et al 2022
  • “German Fighter Pilot Identified After 79 Years from DNA on Envelope”, DutchNews.nl 2022
  • “Health Care Utilization of Fine-Scale Identity by Descent Clusters in a Los Angeles Biobank”, Caggiano et al 2022
  • “Realizing the Promise of Biodiversity Genomics With Highly Accurate Long Reads”, Hotaling et al 2022
  • “A Draft Human Pangenome Reference”, Liao et al 2022
  • “Pleistocene Glacial and Interglacial Ecosystems Inferred from Ancient DNA Analyses of Permafrost Sediments from Batagay Megaslump, East Siberia”, Courtin et al 2022
  • “Cost-Efficient Whole Genome-Sequencing Using Novel Mostly Natural Sequencing-By-Synthesis Chemistry and Open Fluidics Platform”, Almogy et al 2022
  • “Parent-Of-Origin Detection and Chromosome-Scale Haplotyping Using Long-Read DNA Methylation Sequencing and Strand-Seq”, Akbari et al 2022
  • “DNA Methylation Clocks for Dogs and Humans”, Horvath et al 2022
  • “Genomic Selection in Aquaculture Species”, Allal & Nguyen2022
  • “Large-Scale Fungal Strain Sequencing Unravels the Molecular Diversity in Mating Loci Maintained by Long-Term Balancing Selection”, Peris et al 2022
  • “Measuring Biodiversity from DNA in the Air”, Clare et al 2022
  • “Environmental Paleomicrobiology: Using DNA Preserved in Aquatic Sediments to Its Full Potential”, Capo et al 2022
  • “Ultra-Rapid Nanopore Genome Sequencing in a Critical Care Setting”, Gorzynski et al 2022
  • “Microstratigraphic Preservation of Ancient Faunal and Hominin DNA in Pleistocene Cave Sediments”, Massilani et al 2021
  • “The Sequences of 150,119 Genomes in the UK Biobank”, Halldorsson et al 2021
  • “100,000 Genomes Pilot on Rare-Disease Diagnosis in Health Care—Preliminary Report”, Investigators2021
  • “Returning Actionable Genomic Results in a Research Biobank: Analytic Validity, Clinical Implementation, and Resource Usage”, Zawatsky et al 2021
  • “Molecular Recording of Sequential Cellular Events into DNA”, Loveless et al 2021
  • “Parent-Of-Origin Effects in the UK Biobank”, Hofmeister et al 2021
  • “Predicting Skeletal Stature Using Ancient DNA”, Cox et al 2021
  • “Ultra-Cheap and Scalable Epigenetic Age Predictions With TIME-Seq”, Griffin et al 2021
  • “Recording of Cellular Physiological Histories along Optically Readable Self-Assembling Protein Chains”, Linghu et al 2021
  • “DeepConsensus: Gap-Aware Sequence Transformers for Sequence Correction”, Baid et al 2021
  • “Using Historical Museum Samples to Examine Divergent and Parallel Evolution in the Invasive Starling”, Stuart et al 2021
  • “A Global Nucleic Acid Observatory for Biodefense and Planetary Health”, Consortium2021
  • “Infinite Re-Reading of Single Proteins at Single-Amino-Acid Resolution Using Nanopore Sequencing”, Brinkerhoff et al 2021
  • “A Complete Reference Genome Improves Analysis of Human Genetic Variation”, Aganezov et al 2021
  • “Borgs Are Giant Extrachromosomal Elements With the Potential to Augment Methane Oxidation”, Al-Shayeb et al 2021
  • “A Complete Human Genome Sequence Is Close: How Scientists Filled in the Gaps. Researchers Added 200 Million DNA Base Pairs and 115 Protein-Coding Genes—But They’ve yet to Entirely Sequence the Y Chromosome”, Reardon2021
  • “Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome”, Owen et al 2021
  • “The Complete Sequence of a Human Genome”, Nurk et al 2021
  • “Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia Pestis on Human Immunity Genes”, Immel et al 2021
  • “High-Throughput Functional Variant Screens via in Vivo Production of Single-Stranded DNA”, Schubert et al 2021
  • “Multi-Tissue Integrative Analysis of Personal Epigenomes”, Rozowsky et al 2021
  • “Unearthing Neanderthal Population History Using Nuclear and Mitochondrial DNA from Cave Sediments”, Vernot et al 2021
  • “Sedimentary Ancient DNA As a Tool in Paleoecology”, Crump2021
  • “Million-Year-Old DNA Rewrites the Mammoth Family Tree: Genomic Data—The Oldest Ever Recovered from a Fossil—Reveals the Origin and Evolution of the Columbian Mammoth”, Kornei2021
  • “Million-Year-Old DNA Sheds Light on the Genomic History of Mammoths”, Valk et al 2021
  • “Universal DNA Methylation Age across Mammalian Tissues”, Consortium et al 2021
  • “Genome-Scale Sequencing and Analysis of Human, Wolf and Bison DNA from 25,000 Year-Old Sediment”, Gelabert et al 2021
  • “Hybridisation Capture Allows DNA Damage Analysis of Ancient Marine Eukaryotes”, Armbrecht et al 2021
  • “Identifying a Living Great-Grandson of the Lakota Sioux Leader Tatanka Iyotake (Sitting Bull)”, Moltke2021
  • “Biological Structure and Function Emerge from Scaling Unsupervised Learning to 250 Million Protein Sequences”, Rives et al 2020
  • “Long Read Sequencing of 3,622 Icelanders Provides Insight into the Role of Structural Variants in Human Diseases and Other Traits”, Beyter et al 2020
  • “A New and Improved Genome Sequence of Cannabis Sativa”, Braich et al 2020
  • “High-Throughput, Low-Cost and Rapid DNA Sequencing Using Surface-Coating Techniques”, Qin et al 2020
  • “Rare Genetic Variation Underlying Human Diseases and Traits: Results from 200,000 Individuals in the UK Biobank”, Jurgens et al 2020
  • “An Integrative Analysis of Genomic and Exposomic Data for Complex Traits and Phenotypic Prediction”, Zhou & Lee2020
  • “Exome Sequencing and Characterization of 49,960 Individuals in the UK Biobank”, Hout et al 2020
  • “Changes in the Composition of Marine and Sea-Ice Diatoms Derived from Sedimentary Ancient DNA of the Eastern Fram Strait over the past 30 000 Years”, Zimmermann et al 2020
  • “Whole-Exome Imputation within UK Biobank Powers Rare Coding Variant Association and Fine-Mapping Analyses”, Barton et al 2020
  • “Exome-Wide Association Studies in General and Long-Lived Populations Identify Genetic Variants Related to Human Age”, Sin-Chan et al 2020
  • “Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor”, Vuillemin et al 2020
  • “Identifying Regulatory Elements via Deep Learning”, Barshai et al 2020
  • “Genomic Analyses Implicate Noncoding de Novo Variants in Congenital Heart Disease”, Richter et al 2020
  • “Genetic Ancestry Analysis on >93,000 Individuals Undergoing Expanded Carrier Screening Reveals Limitations of Ethnicity-Based Medical Guidelines”, Kaseniit et al 2020
  • “China Is Collecting DNA From Tens of Millions of Men and Boys, Using US Equipment: Even Children Are Pressed into Giving Blood Samples to Build a Sweeping Genetic Database That Will Add to Beijing’s Growing Surveillance Capabilities, Raising Questions about Abuse and Privacy.”, Wee2020
  • “The Maturing Relationship between Quaternary Paleoecology and Ancient Sedimentary DNA”, Edwards2020
  • “An Integrated Polygenic and Clinical Risk Tool Enhances Coronary Artery Disease Prediction”, Aguilera et al 2020
  • “The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems”, Armbrecht2020
  • “Efficient Phasing and Imputation of Low-Coverage Sequencing Data Using Large Reference Panels”, Rubinacci et al 2020
  • “An Optimized Method for the Extraction of Ancient Eukaryote DNA from Marine Sediments”, Armbrecht et al 2020b
  • “Urine As a High-Quality Source of Host Genomic DNA from Wild Populations”, Ozga et al 2020
  • “Whole-Genome Sequencing of Rare Disease Patients in a National Healthcare System”, Ouwehand et al 2020
  • “Sequence and Annotation of 42 Cannabis Genomes Reveals Extensive Copy Number Variation in Cannabinoid Synthesis and Pathogen Resistance Genes”, McKernan et al 2020
  • “Planktonic Foraminifera Genomic Variations Reflect Paleoceanographic Changes in the Arctic: Evidence from Sedimentary Ancient DNA”, Pawłowska et al 2020
  • “A 5700 Year-Old Human Genome and Oral Microbiome from Chewed Birch Pitch”, Jensen et al 2019
  • “Metagenomic Analysis of a Blood Stain from the French Revolutionary Jean-Paul Marat (1743^–₅₀1793_231ya)”, de-Dios et al 2019
  • “UK Biobank Leads the Way in Genetics Research to Tackle Chronic Diseases”, Biobank2019
  • “Genomics Reveals the Origins of Ancient Specimens”, Cong et al 2019
  • “Ancient DNA from Marine Sediments: Precautions and Considerations for Seafloor Coring, Sample Handling and Data Generation”, Armbrecht et al 2019
  • “Leveraging European Infrastructures to Access 1 Million Human Genomes by 2022”, Saunders et al 2019
  • “Activation of Toll-Like Receptor 7 & 8 Encoded by the X Chromosome Alters Sperm Motility and Provides a Novel Simple Technology for Sexing Sperm”, Umehara et al 2019
  • “New Kinship and F_ST Estimates Reveal Higher Levels of Differentiation in the Global Human Population”, Ochoa & Storey2019
  • “A Late Middle Pleistocene Denisovan Mandible from the Tibetan Plateau”, Chen et al 2019d
  • “The York Gospels: a 1,000-Year Biological Palimpsest”, Teasdale2019
  • “Ancient DNA from Mastics Solidifies Connection between Material Culture and Genetics of Mesolithic Hunter–Gatherers in Scandinavia”, Kashuba2019
  • “The Potential of Sedimentary Ancient DNA for Reconstructing past Sea Ice Evolution”, Schepper et al 2019
  • “Genome-Wide Variants of Eurasian Facial Shape Differentiation and a Prospective Model of DNA Based Face Prediction”, Qiao et al 2018
  • “Strand-Seq Enables Reliable Separation of Long Reads by Chromosome via Expectation Maximization”, Ghareghani et al 2018
  • “Re-Identification of Genomic Data Using Long Range Familial Searches”, Erlich et al 2018
  • “Genetic Tools Weed out Misconceptions of Strain Reliability in Cannabis Sativa: Implications for a Budding Industry”, Schwabe & McGlaughlin2018
  • “On the Number of Siblings and p-Th Cousins in a Large Population Sample”, Shchur & Nielsen2018
  • “Crowdsourcing Big Data Research on Human History and Health: from Genealogies to Genomes and Back Again”, Keinan & Lussier2018
  • “Quantitative Analysis of Population-Scale Family Trees With Millions of Relatives”, Kaplanis et al 2018
  • “Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants”, Farnaes et al 2018
  • “Fine-Mapping of an Expanded Set of Type 2 Diabetes Loci to Single-Variant Resolution Using High-Density Imputation and Islet-Specific Epigenome Maps”, Mahajan et al 2018
  • “Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring”, Jiang et al 2018
  • “Genotype Imputation from Large Reference Panels”, Das et al 2018
  • “An Atlas of Genetic Associations in UK Biobank”, Canela-Xandri et al 2017
  • “Genome-Wide Genetic Data on ~500,000 UK Biobank Participants”, Bycroft et al 2017
  • “10 Years of GWAS Discovery: Biology, Function, and Translation”, Visscher et al 2017
  • “DNA.Land: A Digital Biobank Using a Massive Crowdsourcing Approach”, Yuan et al 2017
  • “Genome Graphs and the Evolution of Genome Inference”, Paten et al 2017
  • “Comparison of Methods That Use Whole Genome Data to Estimate the Heritability and Genetic Architecture of Complex Traits”, Evans et al 2017
  • “Excess of Genomic Defects in a Woolly Mammoth on Wrangel Island”, Rogers & Slatkin2017
  • “Racial Minority Group Interest in Direct-To-Consumer Genetic Testing: Findings from the PGen Study”, Landry et al 2017
  • “Capacity-Approaching DNA Storage”, Erlich & Zielinski2016
  • “Clinical Utility of Expanded Carrier Screening: Reproductive Behaviors of At-Risk Couples”, Ghiossi et al 2016
  • “Ancient Mitochondrial DNA Provides High-Resolution Time Scale of the Peopling of the Americas”, Llama2016
  • “Genetic Variance Estimation With Imputed Variants Finds Negligible Missing Heritability for Human Height and Body Mass Index”, Yang et al 2015
  • “Resolving the Complexity of the Human Genome Using Single-Molecule Sequencing”, Chaisson et al 2015
  • “Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth”, Palkopoulou et al 2015
  • “Clinical Outcome of Preimplantation Genetic Diagnosis and Screening Using next Generation Sequencing”, Tan et al 2014
  • “One Hundred Years of Statistical Developments in Animal Breeding”, Gianola & Rosa2014
  • “Genome Sequence of a 45,000-Year-Old Modern Human from Western Siberia”, Fu et al 2014
  • “Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing”, Wilson et al 2014
  • “Recalibrating Equus Evolution Using the Genome Sequence of an Early Middle Pleistocene Horse”, Orlando et al 2013
  • “A Mitochondrial Genome Sequence of a Hominin from Sima De Los Huesos”, Meyer2013
  • “A High Coverage of the Denisovan Hominin”, Meyer2012
  • “Variation in Actual Relationship As a Consequence of Mendelian Sampling and Linkage”, Hill & Weir2011
  • “The Draft Genome and Transcriptome of Cannabis Sativa”, Bakel et al 2011
  • “Ancestry Informative Marker Sets for Determining Continental Origin and Admixture Proportions in Common Populations in America”, Kosoy et al 2009
  • “Demographic History of European Populations of Arabidopsis Thaliana”, François et al 2008
  • “Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland”, Willerslev2007
  • “Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA”, Poinar2006
  • “Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA”, Poinar2006
  • “Sequencing and Analysis of Neanderthal Genomic DNA”, Noonan et al 2006
  • “Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments”, Willerslev2003
  • “Approximate Bayesian Computation in Population Genetics”, Beaumont et al 2002
  • “Revival and Identification of Bacterial Spores in 25 to 40-Million-Year-Old Dominican Amber”, Cano & Borucki1995
  • “Kary B. Mullis’s Nobel Lecture”, Mullis1993
  • “Detecting Genetically Engineered Viruses With Metagenomic Sequencing”
  • “Meet Orchid, the First Whole Genome Embryo Reports”
  • “The Effects of DNA Databases on the Deterrence and Detection of Offenders”
  • “Envisioning a World Immune to Global Catastrophic Biological Risks”
  • “Corroborating Written History With Ancient DNA: The Case of the Well-Man Described in an Old Norse Saga”
  • “She Was Told She Had an Untreatable Disease. But Did She?”
  • “A Primer on Why Microbiome Research Is Hard”
  • “What 2,500 Sequenced Genomes Say About Humanity’s Future”
  • “A New Method of Trace DNA Testing Could Solve More Shootings”
  • “Ancestry’s Genetic Testing Kits Are Heading for Your Stocking This Year”
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