“‘AlphaFold’ Tag”,2019-12-14 (Transformer, AI economics)⁠:

Bibliography for tag ai/nn/transformer/alphafold, most recent first: 46 annotations & 29 links (parent).

• See Also
• Links
  • “Sperm Can’t Unlock an Egg Without This Ancient Molecular Key”
  • “Training Compute-Optimal Protein Language Models”, Cheng et al 2024
  • “Atomically Accurate de Novo Design of Single-Domain Antibodies”, Bennett et al 2024
  • “Press Release: The Nobel Prize in Chemistry 2024”
  • “AlphaFold2 Structures Template Ligand Discovery”, Lyu et al 2023
  • “Self-Play Reinforcement Learning Guides Protein Engineering”, Wang et al 2023c
  • “Evolutionary-Scale Prediction of Atomic Level Protein Structure With a Language Model”, Lin et al 2022
  • “OpenFold: Retraining AlphaFold2 Yields New Insights into Its Learning Mechanisms and Capacity for Generalization”, Ahdritz et al 2022
  • “Top-Down Design of Protein Nanomaterials With Reinforcement Learning”, Lutz et al 2022
  • “Genome-Wide Prediction of Disease Variants With a Deep Protein Language Model”, Brandes et al 2022
  • “Accurate Prediction of Transition Metal Ion Location via Deep Learning”, Dürr et al 2022
  • “Antibody Optimization Enabled by Artificial Intelligence Predictions of Binding Affinity and Naturalness”, Bachas et al 2022
  • “HelixFold-Single: MSA-Free Protein Structure Prediction by Using Protein Language Model As an Alternative”, Fang et al 2022
  • “OmegaFold: High-Resolution de Novo Structure Prediction from Primary Sequence”, Wu et al 2022
  • “HelixFold: An Efficient Implementation of AlphaFold2 Using PaddlePaddle”, Wang et al 2022
  • “Robust Deep Learning Based Protein Sequence Design Using ProteinMPNN”, Dauparas et al 2022
  • “State-Of-The-Art Estimation of Protein Model Accuracy Using AlphaFold”, Roney & Ovchinnikov2022
  • “FastFold: Reducing AlphaFold Training Time from 11 Days to 67 Hours”, Cheng et al 2022
  • “AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-Dependent Kinase 20 (CDK20) Small Molecule Inhibitor”, Ren et al 2022
  • “The Accuracy of Protein Structures in Solution Determined by AlphaFold and NMR”, Fowler & Williamson2022
  • “Protein Structure Predictions to Atomic Accuracy With AlphaFold”, Jumper & Hassabis2022
  • “Computed Structures of Core Eukaryotic Protein Complexes”, Humphreys et al 2021
  • “Towards a Structurally Resolved Human Protein Interaction Network”, Burke et al 2021
  • “A Structural Biology Community Assessment of AlphaFold 2 Applications”, Akdel et al 2021
  • “Single-Sequence Protein Structure Prediction Using Language Models from Deep Learning”, Chowdhury et al 2021
  • “Can AlphaFold2 Predict Protein-Peptide Complex Structures Accurately?”, Ko & Lee2021
  • “Deep Neural Language Modeling Enables Functional Protein Generation across Families”, Madani et al 2021
  • “Accurate Prediction of Protein Structures and Interactions Using a 3-Track Network”, Baek et al 2021
  • “Deep Learning Methods in Protein Structure Prediction”, Torrisi et al 2020
  • “Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model”, Wang et al 2016
  • “Predicting Protein Structures With a Multiplayer Online Game”, Cooper et al 2010
  • “AlphaFold Protein Structure Database”
  • “The Illustrated AlphaFold”
  • “Fabian Fuchs”
  • “Trainable, Memory-Efficient, and GPU-Friendly PyTorch Reproduction of AlphaFold 2”
  • “Open Source Code for AlphaFold”
  • “AlphaFold @ CASP13: ‘What Just Happened?’”
  • “AlphaFold2 @ CASP14: ‘It Feels like One’s Child Has Left Home.’”
  • “The AlphaFold2 Method Paper: A Fount of Good Ideas”
  • “Did DeepMind Solve The Protein Folding Problem?”
  • “AI Is Ushering In a New Scientific Revolution”
  • “CASP14: What Google DeepMind’s AlphaFold 2 Really Achieved, and What It Means for Protein Folding, Biology and Bioinformatics”
  • “AlphaFold 2 Is Here: What’s behind the Structure Prediction Miracle”
  • “A.I. Predicts the Shapes of Molecules to Come”
  • “DeepMind’s AlphaFold Changed How Researchers Work”
  • “This AI Software Nearly Predicted Omicron’s Tricky Structure”
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    • protein-design protein-optimization ligand-discovery sequence-modeling deep-learning
    • protein-folding drug-discovery structure-prediction language-models protein-augmented alpha-folding
    • protein-prediction
    • protein-structure
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